59e0ac66496c36893df2b1440a037557fed23ff4
max
  Mon Mar 23 04:31:33 2026 -0700
fixing up primateai makedoc, refs #37274

diff --git src/hg/makeDb/doc/hg38/primateAi.txt src/hg/makeDb/doc/hg38/primateAi.txt
index 803b2531bbf..c4c7997cfb6 100644
--- src/hg/makeDb/doc/hg38/primateAi.txt
+++ src/hg/makeDb/doc/hg38/primateAi.txt
@@ -1,17 +1,17 @@
 # PrimateAI-3D, Claude max, Mar 19 2026
 
 # Source: PrimateAI-3D.hg38.txt.gz from https://primateai3d.basespace.illumina.com/
 # 70.7M missense variant pathogenicity predictions
 
 cd /hive/data/genomes/hg38/bed/primateai
 # download PrimateAI-3D.hg38.txt.gz from Illumina BaseSpace (requires registration)
 
 # convert to BED (1-based input -> 0-based BED), colored by percentile (blue=benign, red=pathogenic)
-python3 ~/kent/src/hg/makeDb/scripts/primateAiToBigBed.py
+python3 ~/kent/src/hg/makeDb/scripts/primateai/primateAiToBigBed.py
 # 70,667,466 variants written
 
 # sort and convert to bigBed
 sort -k1,1 -k2,2n primateAi.bed > primateAi.sorted.bed
-bedToBigBed -type=bed9+ -as=$HOME/kent/src/hg/makeDb/scripts/primateAi.as -tab \
+bedToBigBed -type=bed9+ -as=$HOME/kent/src/hg/makeDb/scripts/primateai/primateAi.as -tab \
     primateAi.sorted.bed /hive/data/genomes/hg38/chrom.sizes primateAi.bb
 rm primateAi.bed primateAi.sorted.bed