383da828477aad2b3c6053880a64fdbfc2a00cd9
max
  Thu Mar 19 02:30:41 2026 -0700
Fix varFreqs HTML issues and trexplorer citation, from AI code review 2026-03-19, refs #36642

Fix broken $db download URLs to hg38 in 14 HTML files, correct "Japanese"
to "Korean" in kova.html, fix "area" typo in schema.html, fix "Finnland"
to "Finland" in varFreqs.ra, normalize GREGoR capitalization, fix grammar,
quote all target=_blank attributes, capitalize GitHub consistently, and
fix bioRxiv citation formatting in trexplorer.html.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

diff --git src/hg/makeDb/trackDb/human/mxbFreq.html src/hg/makeDb/trackDb/human/mxbFreq.html
index 26d93951cb2..c85f4d06748 100644
--- src/hg/makeDb/trackDb/human/mxbFreq.html
+++ src/hg/makeDb/trackDb/human/mxbFreq.html
@@ -27,32 +27,32 @@
 EGA (Study: EGAS00001005797; Dataset: EGAD00010002361). For the VCFs, email
 andres.moreno@cinvestav.mx to obtain the data.
 </p>
 
 <h2>Methods</h2>
 <p>
 Data processing included GenomeStudio &rarr; PLINK conversion, strand alignment, removal
 of duplicates, update of map positions using dbSNP Build 151 and low-quality
 variants/individuals, and relatedness filtering.
 At UCSC, the phased VCF was lifted from hg19 to hg38 with CrossMap, then allele counts
 (AC, AF, AN) were computed using bcftools fill-tags and genotypes were stripped to produce
 a sites-only frequency VCF.
 </p>
 
 <p>
-We provide documentation that indicates how all source files of the varFreqs track were converted in the <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target=_blank>makeDoc file</a> of the track.
-For some tracks, python scripts were necessary and are also available from <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/scripts/varFreqs" target=_blank>Github</a>.
+We provide documentation that indicates how all source files of the varFreqs track were converted in the <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target="_blank">makeDoc file</a> of the track.
+For some tracks, python scripts were necessary and are also available from <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/scripts/varFreqs" target="_blank">GitHub</a>.
 </p>
 
 <h2>Credits</h2>
 <p>
 We thank the Center for Research and Advanced Studies (Cinvestav) of Mexico for
 generating and providing the frequency data, the National Institute of Medical
 Sciences and Nutrition (INCMNSZ) for DNA extraction, and the Ministry of Health
 together with the National Institute of Public Health (INSP) for the design and
 implementation of the National Health Survey 2000 (ENSA 2000). We also thank
 the ENSA-Genomics Consortium for their contributions to sample collection and
 data processing that made possible the construction of the MXB genomic resource.
 </p>
 
 <h2>References</h2>
 <p>