165a15d6a94d53f8162a01e69f3912a7a23a3b50 max Mon Mar 23 06:47:55 2026 -0700 mostly done with the variant frequencies track, refs#36642 diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index 25947fab34a..0f7a4cdbe9c 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -1,359 +1,465 @@ track varFreqs shortLabel Variant Frequencies longLabel Variant Frequencies from various cohorts or national projects group varRep type bed 12 visibility hide superTrack on track varFreqsAll shortLabel All Databases Combined longLabel Variant Frequencies: All Databases Combined with Consequence Annotations type bigBed 9 + parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/varFreqsAll.bb visibility dense itemRgb on maxWindowToDraw 5000000 + priority 0.1 + #mouseOver $aaChange $dnaChange # Variant type and consequence filters filterValues.varType SNV|SNV,INS|Insertion,DEL|Deletion,MNV|MNV filterLabel.varType Variant Type filterValues.consequence missense|Missense,synonymous|Synonymous,stop_gained|Stop Gained,frameshift|Frameshift,splice_donor|Splice Donor,splice_acceptor|Splice Acceptor,intron|Intron,.|Intergenic filterLabel.consequence Consequence - filterValues.sources aou|AllOfUs,spk|SPARK_iWES,wgs|SFARI_WGS,ga|GenomeAsia100K,kov|KOVA,tom|ToMMo,mcp|MCPS,ind|IndiGenomes,fin|FinnGen,sau|Saudi,swe|SweGen,top|TOPMed,abr|ABraOM + # Source database filter + filterValues.sources AllOfUs|AllOfUs,SPARK|SPARK WES,SFARI_WGS|SFARI WGS,GenomeAsia|GenomeAsia SNVs,GenomeAsiaIndel|GenomeAsia Indels,KOVA|KOVA Korea,ToMMo|ToMMo Japan,IndiGen|IndiGenomes India,FinnGen|FinnGen Finland,Saudi|Saudi,SweGen|SweGen Sweden,TOPMed|TOPMed,ABraOM|ABraOM Brazil,ALFA|ALFA,MGRB|MGRB Australia,HRC|HRC,MexBB|Mexico Biobank,SGDP|SGDP,HGDP1kG|gnomAD HGDP+1kG,GREGoR|GREGoR,SCHEMA|SCHEMA filterType.sources multipleListOr filterLabel.sources Source Database # Length filters filterByRange.refLen on filterLabel.refLen Reference Length filterByRange.altLen on filterLabel.altLen Alternate Length filterByRange.varLen on filterLabel.varLen Length Change # Max AF filter filterByRange.maxAF on filterLabel.maxAF Max Allele Frequency filterLimits.maxAF 0:1 + # Total AC filter + filterByRange.totalAC on + filterLabel.totalAC Total Allele Count (all databases) # Per-database AF filters - filterByRange.aouAF on - filterLabel.aouAF AllOfUs AF - filterByRange.spkAF on - filterLabel.spkAF SPARK AF - filterByRange.wgsAF on - filterLabel.wgsAF SFARI WGS AF - filterByRange.gaAF on - filterLabel.gaAF GenomeAsia AF - filterByRange.kovAF on - filterLabel.kovAF KOVA AF - filterByRange.tomAF on - filterLabel.tomAF ToMMo AF - filterByRange.mcpAF on - filterLabel.mcpAF MCPS AF - filterByRange.indAF on - filterLabel.indAF IndiGenomes AF - filterByRange.finAF on - filterLabel.finAF FinnGen AF - filterByRange.sauAF on - filterLabel.sauAF Saudi AF - filterByRange.sweAF on - filterLabel.sweAF SweGen AF - filterByRange.topAF on - filterLabel.topAF TOPMed AF - filterByRange.abrAF on - filterLabel.abrAF ABraOM AF + filterByRange.AllOfUsAF on + filterLabel.AllOfUsAF AllOfUs AF + filterByRange.SPARKAF on + filterLabel.SPARKAF SPARK WES AF + filterByRange.SFARI_WGSAF on + filterLabel.SFARI_WGSAF SFARI WGS AF + filterByRange.GenomeAsiaAF on + filterLabel.GenomeAsiaAF GenomeAsia SNVs AF + filterByRange.GenomeAsiaIndelAF on + filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF + filterByRange.KOVAAF on + filterLabel.KOVAAF KOVA Korea AF + filterByRange.ToMMoAF on + filterLabel.ToMMoAF ToMMo Japan AF + filterByRange.IndiGenAF on + filterLabel.IndiGenAF IndiGenomes India AF + filterByRange.FinnGenAF on + filterLabel.FinnGenAF FinnGen Finland AF + filterByRange.SaudiAF on + filterLabel.SaudiAF Saudi AF + filterByRange.SweGenAF on + filterLabel.SweGenAF SweGen Sweden AF + filterByRange.TOPMedAF on + filterLabel.TOPMedAF TOPMed AF + filterByRange.ABraOMAF on + filterLabel.ABraOMAF ABraOM Brazil AF + filterByRange.ALFAAF on + filterLabel.ALFAAF ALFA AF + filterByRange.MGRBAF on + filterLabel.MGRBAF MGRB Australia AF + filterByRange.HRCAF on + filterLabel.HRCAF HRC AF + filterByRange.MexBBAF on + filterLabel.MexBBAF Mexico Biobank AF + filterByRange.SGDPAF on + filterLabel.SGDPAF SGDP AF + filterByRange.HGDP1kGAF on + filterLabel.HGDP1kGAF gnomAD HGDP+1kG AF + filterByRange.GREGoRAF on + filterLabel.GREGoRAF GREGoR AF + filterByRange.SCHEMAAF on + filterLabel.SCHEMAAF SCHEMA AF # Per-database AC filters - filterByRange.aouAC on - filterLabel.aouAC AllOfUs AC - filterByRange.spkAC on - filterLabel.spkAC SPARK AC - filterByRange.wgsAC on - filterLabel.wgsAC SFARI WGS AC - filterByRange.gaAC on - filterLabel.gaAC GenomeAsia AC - filterByRange.kovAC on - filterLabel.kovAC KOVA AC - filterByRange.tomAC on - filterLabel.tomAC ToMMo AC - filterByRange.mcpAC on - filterLabel.mcpAC MCPS AC - filterByRange.indAC on - filterLabel.indAC IndiGenomes AC - filterByRange.finAC on - filterLabel.finAC FinnGen AC - filterByRange.sauAC on - filterLabel.sauAC Saudi AC - filterByRange.sweAC on - filterLabel.sweAC SweGen AC - filterByRange.topAC on - filterLabel.topAC TOPMed AC - filterByRange.abrAC on - filterLabel.abrAC ABraOM AC - # Population-specific AF filters (AllOfUs) - filterByRange.aouAF_AFR on - filterLabel.aouAF_AFR AllOfUs AFR AF - filterByRange.aouAF_AMR on - filterLabel.aouAF_AMR AllOfUs AMR AF - filterByRange.aouAF_EAS on - filterLabel.aouAF_EAS AllOfUs EAS AF - filterByRange.aouAF_EUR on - filterLabel.aouAF_EUR AllOfUs EUR AF - filterByRange.aouAF_SAS on - filterLabel.aouAF_SAS AllOfUs SAS AF - # Population-specific AF filters (GenomeAsia) - filterByRange.gaAF_NEA on - filterLabel.gaAF_NEA GenomeAsia NEA AF - filterByRange.gaAF_SEA on - filterLabel.gaAF_SEA GenomeAsia SEA AF - filterByRange.gaAF_SAS on - filterLabel.gaAF_SAS GenomeAsia SAS AF - # Population-specific AF filters (MCPS) - filterByRange.mcpAF_AFR on - filterLabel.mcpAF_AFR MCPS AFR AF - filterByRange.mcpAF_EUR on - filterLabel.mcpAF_EUR MCPS EUR AF - filterByRange.mcpAF_IMX on - filterLabel.mcpAF_IMX MCPS Indigenous MX AF - priority 0.1 + filterByRange.AllOfUsAC on + filterLabel.AllOfUsAC AllOfUs AC + filterByRange.SPARKAC on + filterLabel.SPARKAC SPARK WES AC + filterByRange.SFARI_WGSAC on + filterLabel.SFARI_WGSAC SFARI WGS AC + filterByRange.GenomeAsiaAC on + filterLabel.GenomeAsiaAC GenomeAsia SNVs AC + filterByRange.GenomeAsiaIndelAC on + filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC + filterByRange.KOVAAC on + filterLabel.KOVAAC KOVA Korea AC + filterByRange.ToMMoAC on + filterLabel.ToMMoAC ToMMo Japan AC + filterByRange.IndiGenAC on + filterLabel.IndiGenAC IndiGenomes India AC + filterByRange.FinnGenAC on + filterLabel.FinnGenAC FinnGen Finland AC + filterByRange.SaudiAC on + filterLabel.SaudiAC Saudi AC + filterByRange.SweGenAC on + filterLabel.SweGenAC SweGen Sweden AC + filterByRange.TOPMedAC on + filterLabel.TOPMedAC TOPMed AC + filterByRange.ABraOMAC on + filterLabel.ABraOMAC ABraOM Brazil AC + filterByRange.ALFAAC on + filterLabel.ALFAAC ALFA AC + filterByRange.MGRBAC on + filterLabel.MGRBAC MGRB Australia AC + filterByRange.HRCAC on + filterLabel.HRCAC HRC AC + filterByRange.MexBBAC on + filterLabel.MexBBAC Mexico Biobank AC + filterByRange.SGDPAC on + filterLabel.SGDPAC SGDP AC + filterByRange.HGDP1kGAC on + filterLabel.HGDP1kGAC gnomAD HGDP+1kG AC + filterByRange.GREGoRAC on + filterLabel.GREGoRAC GREGoR AC + filterByRange.SCHEMAAC on + filterLabel.SCHEMAAC SCHEMA AC + # Population-specific AF filters + # AllOfUs populations + filterByRange.AllOfUsAF_AFR on + filterLabel.AllOfUsAF_AFR AllOfUs African AF + filterByRange.AllOfUsAF_AMR on + filterLabel.AllOfUsAF_AMR AllOfUs Indigenous American AF + filterByRange.AllOfUsAF_EAS on + filterLabel.AllOfUsAF_EAS AllOfUs East Asian AF + filterByRange.AllOfUsAF_EUR on + filterLabel.AllOfUsAF_EUR AllOfUs European AF + filterByRange.AllOfUsAF_OCE on + filterLabel.AllOfUsAF_OCE AllOfUs Oceanian AF + filterByRange.AllOfUsAF_SAS on + filterLabel.AllOfUsAF_SAS AllOfUs South Asian AF + filterByRange.AllOfUsAC_AFR on + filterLabel.AllOfUsAC_AFR AllOfUs African AC + filterByRange.AllOfUsAC_AMR on + filterLabel.AllOfUsAC_AMR AllOfUs Indigenous American AC + filterByRange.AllOfUsAC_EAS on + filterLabel.AllOfUsAC_EAS AllOfUs East Asian AC + filterByRange.AllOfUsAC_EUR on + filterLabel.AllOfUsAC_EUR AllOfUs European AC + filterByRange.AllOfUsAC_OCE on + filterLabel.AllOfUsAC_OCE AllOfUs Oceanian AC + filterByRange.AllOfUsAC_SAS on + filterLabel.AllOfUsAC_SAS AllOfUs South Asian AC + # GenomeAsia SNVs populations + filterByRange.GenomeAsiaAF_NEA on + filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF + filterByRange.GenomeAsiaAF_SEA on + filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF + filterByRange.GenomeAsiaAF_SAS on + filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF + filterByRange.GenomeAsiaAC_NEA on + filterLabel.GenomeAsiaAC_NEA GenomeAsia SNVs Northeast Asian AC + filterByRange.GenomeAsiaAC_SEA on + filterLabel.GenomeAsiaAC_SEA GenomeAsia SNVs Southeast Asian AC + filterByRange.GenomeAsiaAC_SAS on + filterLabel.GenomeAsiaAC_SAS GenomeAsia SNVs South Asian AC + # gnomAD HGDP+1kG populations + filterByRange.HGDP1kGAF_afr on + filterLabel.HGDP1kGAF_afr gnomAD HGDP+1kG African AF + filterByRange.HGDP1kGAF_ami on + filterLabel.HGDP1kGAF_ami gnomAD HGDP+1kG Amish AF + filterByRange.HGDP1kGAF_amr on + filterLabel.HGDP1kGAF_amr gnomAD HGDP+1kG Latino AF + filterByRange.HGDP1kGAF_asj on + filterLabel.HGDP1kGAF_asj gnomAD HGDP+1kG Ashkenazi Jewish AF + filterByRange.HGDP1kGAF_eas on + filterLabel.HGDP1kGAF_eas gnomAD HGDP+1kG East Asian AF + filterByRange.HGDP1kGAF_fin on + filterLabel.HGDP1kGAF_fin gnomAD HGDP+1kG Finnish AF + filterByRange.HGDP1kGAF_mid on + filterLabel.HGDP1kGAF_mid gnomAD HGDP+1kG Middle Eastern AF + filterByRange.HGDP1kGAF_nfe on + filterLabel.HGDP1kGAF_nfe gnomAD HGDP+1kG European AF + filterByRange.HGDP1kGAF_oth on + filterLabel.HGDP1kGAF_oth gnomAD HGDP+1kG Other AF + filterByRange.HGDP1kGAF_sas on + filterLabel.HGDP1kGAF_sas gnomAD HGDP+1kG South Asian AF + filterByRange.HGDP1kGAC_afr on + filterLabel.HGDP1kGAC_afr gnomAD HGDP+1kG African AC + filterByRange.HGDP1kGAC_ami on + filterLabel.HGDP1kGAC_ami gnomAD HGDP+1kG Amish AC + filterByRange.HGDP1kGAC_amr on + filterLabel.HGDP1kGAC_amr gnomAD HGDP+1kG Latino AC + filterByRange.HGDP1kGAC_asj on + filterLabel.HGDP1kGAC_asj gnomAD HGDP+1kG Ashkenazi Jewish AC + filterByRange.HGDP1kGAC_eas on + filterLabel.HGDP1kGAC_eas gnomAD HGDP+1kG East Asian AC + filterByRange.HGDP1kGAC_fin on + filterLabel.HGDP1kGAC_fin gnomAD HGDP+1kG Finnish AC + filterByRange.HGDP1kGAC_mid on + filterLabel.HGDP1kGAC_mid gnomAD HGDP+1kG Middle Eastern AC + filterByRange.HGDP1kGAC_nfe on + filterLabel.HGDP1kGAC_nfe gnomAD HGDP+1kG European AC + filterByRange.HGDP1kGAC_oth on + filterLabel.HGDP1kGAC_oth gnomAD HGDP+1kG Other AC + filterByRange.HGDP1kGAC_sas on + filterLabel.HGDP1kGAC_sas gnomAD HGDP+1kG South Asian AC + # GREGoR populations + filterByRange.GREGoRAF_AFF on + filterLabel.GREGoRAF_AFF GREGoR Affected AF + filterByRange.GREGoRAF_UNA on + filterLabel.GREGoRAF_UNA GREGoR Unaffected AF + filterByRange.GREGoRAF_UNK on + filterLabel.GREGoRAF_UNK GREGoR Unknown AF + filterByRange.GREGoRAC_AFF on + filterLabel.GREGoRAC_AFF GREGoR Affected AC + filterByRange.GREGoRAC_UNA on + filterLabel.GREGoRAC_UNA GREGoR Unaffected AC + filterByRange.GREGoRAC_UNK on + filterLabel.GREGoRAC_UNK GREGoR Unknown AC + skipEmptyFields on track allofus shortLabel AllOfUs v7 245k WGS longLabel Variant Frequencies: AllOfUs - v7 245k WGS, only with allele count >= 20 type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/allofus/allOfUs.locAncFreq.vcf.gz dataVersion V7 visibility pack priority 0.5 #track me #shortLabel Regeneron Million Exomes 983k WES #longLabel Variant Frequencies: Regeneron One Million Exomes (ME) Project - 983k WGS #parent varFreqs on #bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz #visibility pack #type vcfTabix #hapClusterEnabled true #dataVersion 10/04/2023, v1.1.3 #tableBrowser off #priority 1 track topmed shortLabel NHLBI TOPMED 10 151k WGS longLabel Variant Frequencies: NHLBI TOPMED - 151k WGS type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/topmed/topmed10.vcf.gz dataVersion Freeze 10 visibility pack priority 2 track sfariSparkExomes shortLabel SFARI Spark 140k WES longLabel Variant Frequencies: SFARI SPARK - 140k WES type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/sfari/SPARK.iWES_v3.2024_08.deepvariant.norm.vcf.gz dataVersion iWES v3 2024_08 visibility pack priority 2.5 track sfariSparkWgs shortLabel SFARI Spark 12k WGS longLabel Variant Frequencies: SFARI SPARK - 12,519 WGS type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/sfari/wgs_12519_genome.deepvariant.norm.vcf.gz dataVersion iWGS v1.1 visibility pack priority 2.5 html sfariSparkExomes #track mcps #shortLabel Mexico City Prospective Study 10k WGS+141k WES #longLabel Variant Frequencies: Mexico City Prospective Study (MCPS) #tableBrowser off #parent varFreqs on #bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz #visibility pack #type vcfTabix #dataVersion May 2023 (v1.2.0) #priority 3 track tommo60kjpn shortLabel Japan ToMMO 61k WGS longLabel Variant Frequencies: Japan 61k - ToMMO SNV+Indels type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/tommo61kjpn/tommo-61kjpn-20250616-GRCh38-snvindel-af-autosome.vcf.gz visibility pack dataVersion 2025-06-16 priority 5 track alfaVcf shortLabel NCBI ALFA 408k WGS/WES/array longLabel Variant Frequencies: NCBI ALFA (dbGaP data) - 408k mixed WGS/WES/array, 163M variants type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA.vcf.gz visibility pack dataVersion R4 priority 4.1 url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab urlLabel NCBI Variation Page track finngen parent varFreqs on visibility pack type vcfTabix shortLabel Finland FinnGen 500k imputed longLabel Variant Frequencies: Finland FinnGen - 500k samples, arrays, imputation used 8.5k WGS priority 4.5 bigDataUrl /gbdb/$D/varFreqs/finngen/finnge_R12_annotated_variants_v1.vcf.gz dataVersion R12 tableBrowser off track swefreq parent varFreqs on visibility pack type vcfTabix shortLabel Sweden SweGen 1k WGS longLabel Variant Frequencies: Sweden SweGen - 1k WGS priority 4.7 bigDataUrl /gbdb/$D/varFreqs/swefreq/swegen_frequencies_fixploidy_GRCh38_20190204.vcf.gz dataVersion 20251201 tableBrowser off track mgrb shortLabel Australia MGRB 4k WGS longLabel Variant Frequencies: Australia Medical Genome Reference Bank - 4,011 WGS type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mgrb/MGRB.phase3.GRCh38.norm.vcf.gz dataVersion Phase 3 visibility pack # no downloads as per Matt Hobbs email Jan 28 2026 tableBrowser off track gasp shortLabel GenomeAsia Pilot Subs 1.7k WGS longLabel Variant Frequencies: GenomeAsia Pilot - Substitutions type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz visibility pack track gaspIndel shortLabel GenomeAsia Pilot Indels 1.7k WGS longLabel Variant Frequencies: GenomeAsia Pilot - Indels type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/ga100k/All.indels.annot.cont_withmaf.vcf.gz visibility pack html gasp track abraom shortLabel Brazil ABraOM 1k WGS longLabel Variant Frequencies: ABraOM Brazil - 1,171 unrelated individuals type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/abraom/abraom.vcf.gz visibility pack dataVersion SABE-WGS-1171 Sep 2020 track indigenomes shortLabel India IndiGenomes 1k WGS longLabel Variant Frequencies: IndiGenomes India - 1,029 samples type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/indigenomes/IndiGenomes_Variants.vcf.gz visibility pack track kova shortLabel Korea KOVA 1.9k WGS+3.5k WES longLabel Variant Frequencies: KOVA Korea - 5305 samples, 1.9k WGS+3.5k WES type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/kova/kova.v7.vcf.gz visibility pack tableBrowser off dataVersion V7 track npm shortLabel Singapore NPM 9.7k WGS longLabel Variant Frequencies: NPM Singapore - 9,770 WGS samples type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/npm/SG10K_Health_r5.3.2.sites.vcf.bgz visibility pack tableBrowser off dataVersion r5.3.2 track hrc shortLabel HRC 30k WGS longLabel Variant Frequencies: Haplotype Reference Consortium - 30k WGS (excl. 1000 Genomes) type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/hrc/hrc.vcf.gz visibility pack dataVersion r1.1 track saudi shortLabel Saudi Genome Project 302 WGS longLabel Variant Frequencies: Saudi Genome Project - 302 WGS samples type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/saudi/saudi.vcf.gz visibility pack track schema shortLabel SCHEMA Schizophrenia 121k WES longLabel Variant Frequencies: SCHEMA Schizophrenia Exome Meta-Analysis - WES 24k cases, 97k controls type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/schema/SCHEMA_variant_results_withAF.vcf.gz visibility pack dataVersion 2022 priority 4.9 url https://schema.broadinstitute.org/ urlLabel SCHEMA Browser track mxbFreq shortLabel Mexico Biobank 6k Array longLabel Variant Frequencies: Mexico Biobank - 6,011 individuals, genotyping array type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/mxb/mxb.freq.vcf.gz visibility pack dataVersion Nov 2025 (hg38 lift) priority 6 track sgdpFreq shortLabel SGDP 279 WGS longLabel Variant Frequencies: Simons Genome Diversity Project - 279 WGS, 142 populations type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/sgdpFreq/sgdp.freq.vcf.gz visibility pack dataVersion 2016-12-07 (hg38 lift) priority 7 track gregor shortLabel GREGoR R4 3.6k WGS longLabel Variant Frequencies: GREGoR Consortium - Release 4, 3,624 WGS samples, rare disease families type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/gregor/gregor.vcf.gz visibility pack dataVersion R04 (Oct 2025) priority 8 track hgdp1kFreq shortLabel gnomAD HGDP+1kG 4k WGS longLabel Variant Frequencies: gnomAD HGDP + 1000 Genomes - 4,094 WGS, 80 populations type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/hgdp1kFreq/hgdp1k.freq.vcf.gz visibility pack dataVersion v3.1.2 priority 8