159988dc8595c08c87164253d8d09997c925661c lrnassar Tue Apr 14 13:03:07 2026 -0700 Creating a new RTS for the InSiGHT VCEP, refs #36582 diff --git src/hg/htdocs/inc/recTrackSets.hg38.tab src/hg/htdocs/inc/recTrackSets.hg38.tab index aba854afc97..5c6dcf8b988 100644 --- src/hg/htdocs/inc/recTrackSets.hg38.tab +++ src/hg/htdocs/inc/recTrackSets.hg38.tab @@ -2,16 +2,16 @@ # # File is tab-separated. userName and sessionName are fields in hgcentral.namedSessionDb table # sessionName is cgi-decoded to readable text # Note that named sessions support description in settings field, however the description in # this file is used in browser (allows non-owner of session, e.g. QA, to edit) # # For details on how to update this file, see the wiki: http://genomewiki.ucsc.edu/genecats/index.php/Recommended_Track_Sets # # Format: label, userName, sessionName, description Clinical SNVs View Clinical_SNVs_hg38 Assess potential disease contributions of single nucleotide variants in coding regions Clinical CNVs View Clinical_CNVs_hg38 Assess potential disease contributions of structural variants in coding regions Non-coding SNVs View Non_Coding_SNVs_hg38 Investigate functional aspects of non-coding variants Determine Exon Relevance View Exon_Relevance_hg38 Examine if variants are present in an exon required for the function of the expressed gene product Problematic Regions View Problematic_Regions_hg38 Evaluate if annotations are on potential low confidence regions due to high homology or other reported concerns ENIGMA BRCA1/BRCA2 VCEP View BRCA1_BRCA2_ENIGMA_hg38 Assess potential disease contribution of variants on BRCA1 and BRCA2 according to the ENIGMA VCEP guidelines - +InSiGHT Lynch Syndrome VCEP View insightVcepHg38 Assess potential disease contribution of variants on MLH1, MSH2, MSH6, and PMS2 according to the InSiGHT VCEP guidelines