55225be4fa1c5b6c1d886c524606b67701e86448
lrnassar
  Tue Apr 14 10:32:57 2026 -0700
Fix typo, comment error, and bare except in InSiGHT build scripts per code review. refs #36582

diff --git src/hg/makeDb/scripts/insight/insightFunctionalAssays.py src/hg/makeDb/scripts/insight/insightFunctionalAssays.py
index 32ceaa0699e..dd08b4c067a 100644
--- src/hg/makeDb/scripts/insight/insightFunctionalAssays.py
+++ src/hg/makeDb/scripts/insight/insightFunctionalAssays.py
@@ -95,34 +95,34 @@
    string score_value;      "Functional score (OddsPath or LOF)"
    string paperRef;         "Publication reference"
    lstring _mouseOver;      "HTML mouseover text"
    )
 """
 
 # ============================================================================
 # Utility functions
 # ============================================================================
 
 def bash(cmd):
     """Run the cmd in bash subprocess"""
     try:
         rawBashOutput = subprocess.run(cmd, check=True, shell=True,
                                        stdout=subprocess.PIPE, universal_newlines=True, stderr=subprocess.STDOUT)
-        bashStdoutt = rawBashOutput.stdout
+        bashStdout = rawBashOutput.stdout
     except subprocess.CalledProcessError as e:
         raise RuntimeError("command '{}' return with error (code {}): {}".format(e.cmd, e.returncode, e.output))
-    return(bashStdoutt)
+    return(bashStdout)
 
 def get_transcript_info(db, accession):
     """Query hgsql to get transcript information from ncbiRefSeq"""
     query = f"SELECT name, chrom, strand, txStart, txEnd, cdsStart, cdsEnd, exonStarts, exonEnds FROM ncbiRefSeq WHERE name='{accession}'"
     result = bash(f'hgsql {db} -Ne "{query}"')
 
     if not result.strip():
         raise ValueError(f"Transcript {accession} not found in {db}.ncbiRefSeq")
 
     fields = result.strip().split('\t')
 
     # Parse exon starts and ends (comma-separated, trailing comma)
     exon_starts = [int(x) for x in fields[7].rstrip(',').split(',')]
     exon_ends = [int(x) for x in fields[8].rstrip(',').split(',')]