55225be4fa1c5b6c1d886c524606b67701e86448
lrnassar
  Tue Apr 14 10:32:57 2026 -0700
Fix typo, comment error, and bare except in InSiGHT build scripts per code review. refs #36582

diff --git src/hg/makeDb/scripts/insight/insightPVS1.py src/hg/makeDb/scripts/insight/insightPVS1.py
index c8f94fe5f47..5b2ab040a43 100644
--- src/hg/makeDb/scripts/insight/insightPVS1.py
+++ src/hg/makeDb/scripts/insight/insightPVS1.py
@@ -18,34 +18,34 @@
   MSH6: NM_000179.3  (chr2, + strand)
   PMS2: NM_000535.7  (chr7, - strand)
 
 Author: Generated for InSiGHT VCEP
 Date: 2025
 """
 
 import subprocess
 import os
 
 def bash(cmd):
     """Run the cmd in bash subprocess"""
     try:
         rawBashOutput = subprocess.run(cmd, check=True, shell=True,
                                        stdout=subprocess.PIPE, universal_newlines=True, stderr=subprocess.STDOUT)
-        bashStdoutt = rawBashOutput.stdout
+        bashStdout = rawBashOutput.stdout
     except subprocess.CalledProcessError as e:
         raise RuntimeError("command '{}' return with error (code {}): {}".format(e.cmd, e.returncode, e.output))
-    return(bashStdoutt)
+    return(bashStdout)
 
 # ============================================================================
 # Configuration
 # ============================================================================
 OUTPUT_DIR = "/hive/users/lrnassar/insightHub/pvs1"
 
 # Transcripts to query
 TRANSCRIPTS = {
     'MLH1': 'NM_000249.4',
     'MSH2': 'NM_000251.3',
     'MSH6': 'NM_000179.3',
     'PMS2': 'NM_000535.7',
 }
 
 # PVS1 regions defined by codon ranges