ac1e5ad678524308ef32df6154f7f1632a54a266
lrnassar
Fri Apr 17 10:27:56 2026 -0700
Adding snowflake pennantIcon to AVADA pointing to the VARAICO news archive release, and adding reciprocal relatedTracks entries between AVADA and Varaico for hg19 and hg38. No RM.
diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index c5a1a26c941..a9344786817 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -182,30 +182,31 @@
html varsInPubs.html
track avada
shortLabel Avada Variants
longLabel Avada Variants extracted from full text publications
visibility dense
type bigBed 9 +
bigDataUrl /gbdb/$D/bbi/avada.bb
noScoreFilter on
exonNumbers off
#itemRgb on
dataVersion release 1
parent varsInPubs pack
urls pmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" doi="https://doi.org/$$" ensId="http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=$$" entrezs="https://www.ncbi.nlm.nih.gov/gene/$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$"
mouseOver Variant: $variant
Ensembl ID: $ensId
Title of Publication: $title
Reference: $ref
Authors: $authors
Pubmed ID: $pmid
+ pennantIcon snowflake.png ../goldenPath/newsarch.html#052125 "The AVADA track is no longer updated. See VARAICO for the latest variants mined from papers."
html varsInPubs.html
track varChat
shortLabel enGenome VarChat
longLabel enGenome VarChat: Literature match and variant's summary
visibility dense
type bigBed 9 + 4
bigDataUrl /gbdb/$D/bbi/varChat.bb
noScoreFilter on
exonNumbers off
parent varsInPubs pack
maxWindowCoverage 40000
maxItems 1000000
mouseOverField _mouseOver
url https://varchat.engenome.com/search?source=ucsc&text=$