6ab7b1dfca6cc123dfe09a9e9f8afdf0c8cbdf31 max Mon Apr 20 06:40:58 2026 -0700 changes after code review, refs #37376 diff --git src/hg/makeDb/trackDb/human/longReadVariants.ra src/hg/makeDb/trackDb/human/longReadVariants.ra index 8a83ff272d5..390e342bdae 100644 --- src/hg/makeDb/trackDb/human/longReadVariants.ra +++ src/hg/makeDb/trackDb/human/longReadVariants.ra @@ -1,38 +1,38 @@ track longReadVariants superTrack on shortLabel Long-read Variants longLabel Long-read Variants group varRep visibility hide track deepvariant parent longReadVariants shortLabel CoLoRSdb small variants longLabel CoLoRSdb long-read small variants type vcfTabix visibility pack - bigDataUrl /gbdb/$D/colorsDb/colorsDb.v1.2.0.deepvariant.glnexus.vcf.gz + bigDataUrl /gbdb/$D/colorsDb/CoLoRSdb.GRCh38.v1.2.0.deepvariant.glnexus.vcf.gz html colorsDb.html track pbsv parent longReadVariants shortLabel CoLoRSdb structural variants longLabel CoLoRSdb long-read structural variants type bigBed 9 + visibility pack itemRgb on bigDataUrl /gbdb/$D/colorsDb/colorsDb.v1.2.0.sv.bb mouseOver Position: $chrom:${chromStart}-${chromEnd}
SV type: ${svType}
Length: ${svLen} bp
Allele Frequency: ${af}
Alt allele count: ${AC} (Hom: ${AC_Hom}, Het: ${AC_Het}, Hemi: ${AC_Hemi})
Number of samples: ${NS}
Total allele number: ${AN}
HWE p-value: ${HWE}
ExcHet: ${ExcHet} html colorsDb.html searchIndex name,svType filter.svLen 0 filterByRange.svLen on filterLimits.svLen 0:12000 filterLabel.svLen SV length (bp) filterValues.svType INS,DEL,INV filterType.svType multiple filterLabel.svType Type filter.AC 0 filterByRange.AC on filterLimits.AC 0:3000 filterLabel.AC Alt allele count (AC)