All File Changes

v496_base to v497_preview (2026-03-30 to 2026-04-06) v497

• docs/index.md
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    fdfd2f7808d5ca212f9433e5f941b9aba74f07af Tue Mar 31 16:12:39 2026 -0700
    Small tweaks to new browser docs intro page, refs #36894
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    043afd5b0ed6b073a1928f23bc56d465f5eaa9d2 Wed Apr 1 09:08:10 2026 -0700
    Fix double space typo on docs intro page. refs #36894
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 3, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/hgTracks/bedTrack.c
  • lines changed 4, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
  • lines changed 60, context: html, text, full: html, text
    5c9ad606d5b486c3e1360250907cae2c13869d90 Sun Mar 29 12:52:58 2026 -0700
    Factor out common quickLift SQL load pattern into shared functions Add quickLiftResolveTable() and quickLiftSqlLoadBeds() to eliminate duplicated custom-track resolution and SQL-based quickLift loading code across bedTrack.c, simpleTracks.c, gvfTrack.c, and hgc.c. No redmine Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/hgTracks/bigWigTrack.c
  • lines changed 7, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
  • lines changed 13, context: html, text, full: html, text
    713cc06056876ff148c7555a4eb520e8987fb793 Mon Mar 30 12:53:19 2026 -0700
    switch gcOnFly to bigWig file at a specified density refs #35958
• src/hg/hgTracks/gvfTrack.c
  • lines changed 15, context: html, text, full: html, text
    5c9ad606d5b486c3e1360250907cae2c13869d90 Sun Mar 29 12:52:58 2026 -0700
    Factor out common quickLift SQL load pattern into shared functions Add quickLiftResolveTable() and quickLiftSqlLoadBeds() to eliminate duplicated custom-track resolution and SQL-based quickLift loading code across bedTrack.c, simpleTracks.c, gvfTrack.c, and hgc.c. No redmine Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/hgTracks/imageV2.c
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    7cc2de4244e51395682085c51e3fe27ba9f1cfc5 Fri Apr 3 16:15:20 2026 -0700
    Items with a tooltip but no name now get their mouseovers to show up correctly, refs #37322
• src/hg/hgTracks/rmskTrack.c
  • lines changed 3, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/hgTracks/simpleTracks.c
  • lines changed 17, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
  • lines changed 7, context: html, text, full: html, text
    5c9ad606d5b486c3e1360250907cae2c13869d90 Sun Mar 29 12:52:58 2026 -0700
    Factor out common quickLift SQL load pattern into shared functions Add quickLiftResolveTable() and quickLiftSqlLoadBeds() to eliminate duplicated custom-track resolution and SQL-based quickLift loading code across bedTrack.c, simpleTracks.c, gvfTrack.c, and hgc.c. No redmine Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/hgTracks/wigTrack.c
  • lines changed 7, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/hgc/hgc.c
  • lines changed 9, context: html, text, full: html, text
    5c9ad606d5b486c3e1360250907cae2c13869d90 Sun Mar 29 12:52:58 2026 -0700
    Factor out common quickLift SQL load pattern into shared functions Add quickLiftResolveTable() and quickLiftSqlLoadBeds() to eliminate duplicated custom-track resolution and SQL-based quickLift loading code across bedTrack.c, simpleTracks.c, gvfTrack.c, and hgc.c. No redmine Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/hgc/vcfClick.c
  • lines changed 93, context: html, text, full: html, text
    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/htdocs/contribTracks.html
  • lines changed 1, context: html, text, full: html, text
    651b51fcb3020fe99b030a09dc0c4b941faedae9 Tue Mar 31 09:47:53 2026 -0700
    Add missing documentation.html to directory structure example on contributed tracks page. refs #36957
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 8, context: html, text, full: html, text
    3e64f02d68a96da3cbcc99b033a7a0a69937ef09 Tue Mar 31 16:00:18 2026 -0700
    One more news item for posterity, no ticket
  • lines changed 46, context: html, text, full: html, text
    6f0258a40a9faf0ede69fcf5731c83ec3857bb92 Fri Apr 3 10:06:26 2026 -0700
    Adding newsarch and indexNews entries for new heatmap display mode documentation. refs #36176
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 2, context: html, text, full: html, text
    a748cb456931903315cc62bf3628c31d54a8bd99 Tue Mar 31 15:59:38 2026 -0700
    Misc test, can remove in a couple days. No ticket
• src/hg/htdocs/indexMeetings.html
  • lines changed 20, context: html, text, full: html, text
    b5991e201f5383e7cd83572853f92360b092d99f Thu Apr 2 09:56:37 2026 -0700
    Updating the meetings page with latest b0b additions.
• src/hg/htdocs/indexNews.html
  • lines changed 11, context: html, text, full: html, text
    6f0258a40a9faf0ede69fcf5731c83ec3857bb92 Fri Apr 3 10:06:26 2026 -0700
    Adding newsarch and indexNews entries for new heatmap display mode documentation. refs #36176
• src/hg/htdocs/staff.html
  • lines changed 2, context: html, text, full: html, text
    5e1c59cdfcd8cdcc09f75d4081d78d1f8c6b80ba Tue Mar 31 10:35:08 2026 -0700
    Swaping out QA manager, no RM.
• src/hg/inc/hui.h
  • lines changed 3, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
  • lines changed 3, context: html, text, full: html, text
    98faa189349f1bb9b033f314ffe327541bacf290 Tue Mar 31 15:17:30 2026 -0700
    Add a new hgFindSpec setting, searchItemLabel, that allows using hgFindSpec defined labels (with variable substitution) as the label for each line of a search result. This only works for bigBed tracks. refs #37299
• src/hg/inc/quickLift.h
  • lines changed 13, context: html, text, full: html, text
    5c9ad606d5b486c3e1360250907cae2c13869d90 Sun Mar 29 12:52:58 2026 -0700
    Factor out common quickLift SQL load pattern into shared functions Add quickLiftResolveTable() and quickLiftSqlLoadBeds() to eliminate duplicated custom-track resolution and SQL-based quickLift loading code across bedTrack.c, simpleTracks.c, gvfTrack.c, and hgc.c. No redmine Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/inc/vcfUi.h
  • lines changed 1, context: html, text, full: html, text
    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/js/hgSearch.js
  • lines changed 4, context: html, text, full: html, text
    dd31f687902a25feb2463499b52923a9505db05f Mon Mar 30 11:39:52 2026 -0700
    Remove context click event and dblclick event for jstree on hgSearch results, refs #37293
• src/hg/js/hui.js
  • lines changed 23, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/js/utils.js
  • lines changed 7, context: html, text, full: html, text
    7cc2de4244e51395682085c51e3fe27ba9f1cfc5 Fri Apr 3 16:15:20 2026 -0700
    Items with a tooltip but no name now get their mouseovers to show up correctly, refs #37322
• src/hg/lib/bigBedFind.c
  • lines changed 41, context: html, text, full: html, text
    98faa189349f1bb9b033f314ffe327541bacf290 Tue Mar 31 15:17:30 2026 -0700
    Add a new hgFindSpec setting, searchItemLabel, that allows using hgFindSpec defined labels (with variable substitution) as the label for each line of a search result. This only works for bigBed tracks. refs #37299
• src/hg/lib/cart.c
  • lines changed 5, context: html, text, full: html, text
    f0cd10388499d445c52a3642a4b9111c5f403b7d Mon Mar 30 15:17:28 2026 -0700
    improving error message when db was not found, refs #37305
• src/hg/lib/hui.c
  • lines changed 10, context: html, text, full: html, text
    cfeb4d454d22011d7f637d060e7a51057d168504 Mon Mar 30 12:01:16 2026 -0700
    Add color picker support for most track types, refs #20460 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
  • lines changed 51, context: html, text, full: html, text
    98faa189349f1bb9b033f314ffe327541bacf290 Tue Mar 31 15:17:30 2026 -0700
    Add a new hgFindSpec setting, searchItemLabel, that allows using hgFindSpec defined labels (with variable substitution) as the label for each line of a search result. This only works for bigBed tracks. refs #37299
• src/hg/lib/quickLift.c
  • lines changed 35, context: html, text, full: html, text
    5c9ad606d5b486c3e1360250907cae2c13869d90 Sun Mar 29 12:52:58 2026 -0700
    Factor out common quickLift SQL load pattern into shared functions Add quickLiftResolveTable() and quickLiftSqlLoadBeds() to eliminate duplicated custom-track resolution and SQL-based quickLift loading code across bedTrack.c, simpleTracks.c, gvfTrack.c, and hgc.c. No redmine Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/lib/trackDbCustom.c
  • lines changed 1, context: html, text, full: html, text
    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    4e24d58253928c3ed5ac02745b9dd6c4573217d1 Tue Mar 31 13:05:33 2026 -0700
    BRC update refs #34337
• src/hg/makeDb/doc/evaSnp8.txt
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    9749d0a9af52aead1611244dbfddcbcbccc96c22 Fri Apr 3 13:00:00 2026 -0700
    adding these contrib tracks to the GenArk browsers refs #36957
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    0c04445d60f81af3c436f224efeacac0fd32d47b Tue Mar 31 20:12:20 2026 -0700
    catchin g up stray assemblies
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
  • lines changed 8, context: html, text, full: html, text
    0c04445d60f81af3c436f224efeacac0fd32d47b Tue Mar 31 20:12:20 2026 -0700
    catchin g up stray assemblies
• src/hg/makeDb/doc/hg38/mpra.txt
  • lines changed 5, context: html, text, full: html, text
    ac4df3685a2c6944ad7a07011531794fc2acec79 Sun Apr 5 23:14:25 2026 -0700
    docs update
• src/hg/makeDb/doc/hg38/mprabase.txt
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    9de039a7dceb056ccfa604e0ac38e0bb901ef1ec Mon Mar 30 17:11:20 2026 -0700
    MPRA track updates, #34284
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    ac4df3685a2c6944ad7a07011531794fc2acec79 Sun Apr 5 23:14:25 2026 -0700
    docs update
• src/hg/makeDb/doc/hg38/mpravardb.txt
  • lines changed 8, context: html, text, full: html, text
    9de039a7dceb056ccfa604e0ac38e0bb901ef1ec Mon Mar 30 17:11:20 2026 -0700
    MPRA track updates, #34284
• src/hg/makeDb/doc/hg38/varFreqs.txt
  • lines changed 10, context: html, text, full: html, text
    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    4e24d58253928c3ed5ac02745b9dd6c4573217d1 Tue Mar 31 13:05:33 2026 -0700
    BRC update refs #34337
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
  • lines changed 1, context: html, text, full: html, text
    2544f90d5a0bac3b30417ffa57e11b8bd6e4aa15 Tue Mar 31 20:14:50 2026 -0700
    an obsolete version of GCA_016700215.2
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    0c04445d60f81af3c436f224efeacac0fd32d47b Tue Mar 31 20:12:20 2026 -0700
    catchin g up stray assemblies
• src/hg/makeDb/doc/mm10/encode4.cCREs.txt
  • lines changed 206, context: html, text, full: html, text
    8507a408f2eb8830af68f9bbb94a258861450bcc Tue Mar 31 10:03:13 2026 -0700
    Adding makedoc for mm10 ENCODE4 cCREs track. refs #37131
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    0c04445d60f81af3c436f224efeacac0fd32d47b Tue Mar 31 20:12:20 2026 -0700
    catchin g up stray assemblies
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 5, context: html, text, full: html, text
    0c04445d60f81af3c436f224efeacac0fd32d47b Tue Mar 31 20:12:20 2026 -0700
    catchin g up stray assemblies
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 6, context: html, text, full: html, text
    4e24d58253928c3ed5ac02745b9dd6c4573217d1 Tue Mar 31 13:05:33 2026 -0700
    BRC update refs #34337
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    7410356b01b1eb4f83338e08c69c4ca347111f00 Tue Mar 31 19:57:24 2026 -0700
    catching up some orphaned assemblies probably VGP update
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    5c4623f2e8dd4a64a99c228c201a260076e71ff5 Tue Mar 31 20:09:41 2026 -0700
    one mor stray assembly added
• src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    0c04445d60f81af3c436f224efeacac0fd32d47b Tue Mar 31 20:12:20 2026 -0700
    catchin g up stray assemblies
• src/hg/makeDb/hgGcPercent/hgGcPercent.c
  • lines changed 9, context: html, text, full: html, text
    f3a4a303938f64a47233dc52a6bb766442466b4c Mon Mar 30 13:15:16 2026 -0700
    correctly calculate to end of sequence and sequences smaller than the window size refs #35958
• src/hg/makeDb/trackDb/betaGenArk.txt
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    fa475271932759b28815cf54128e58e28a983ed2 Fri Apr 3 12:42:21 2026 -0700
    adding evaSnp8 contrib track refs #36957
• src/hg/makeDb/trackDb/evaSnp.ra
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    e1b75109b63da525f8d7bf0da81a3c13a81ffc0a Wed Apr 1 09:21:29 2026 -0700
    Squashing old pennantIcons, no RM.
• src/hg/makeDb/trackDb/human/han945SvVcf.html
  • lines changed 64, context: html, text, full: html, text
    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
  • lines changed 2, context: html, text, full: html, text
    e1b75109b63da525f8d7bf0da81a3c13a81ffc0a Wed Apr 1 09:21:29 2026 -0700
    Squashing old pennantIcons, no RM.
• src/hg/makeDb/trackDb/human/hg38/mpra.html
  • lines changed 207, context: html, text, full: html, text
    9de039a7dceb056ccfa604e0ac38e0bb901ef1ec Mon Mar 30 17:11:20 2026 -0700
    MPRA track updates, #34284
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    d1e99290a854df9b05063c10c91466f6e8fa034a Sun Apr 5 23:12:31 2026 -0700
    Revert "renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284" This reverts commit 93ffd483ab062d09df2743ccc0e32013e91fbd76.
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    697dc500699e5926a9ba084a264354baefbafb2f Sun Apr 5 23:20:10 2026 -0700
    docs update
• src/hg/makeDb/trackDb/human/hg38/mpra.ra
  • lines changed 10, context: html, text, full: html, text
    9de039a7dceb056ccfa604e0ac38e0bb901ef1ec Mon Mar 30 17:11:20 2026 -0700
    MPRA track updates, #34284
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    d1e99290a854df9b05063c10c91466f6e8fa034a Sun Apr 5 23:12:31 2026 -0700
    Revert "renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284" This reverts commit 93ffd483ab062d09df2743ccc0e32013e91fbd76.
• src/hg/makeDb/trackDb/human/hg38/mpraVarDb.html
  • lines changed 220, context: html, text, full: html, text
    9de039a7dceb056ccfa604e0ac38e0bb901ef1ec Mon Mar 30 17:11:20 2026 -0700
    MPRA track updates, #34284
• src/hg/makeDb/trackDb/human/hg38/mprabase.html
  • lines changed 129, context: html, text, full: html, text
    9de039a7dceb056ccfa604e0ac38e0bb901ef1ec Mon Mar 30 17:11:20 2026 -0700
    MPRA track updates, #34284
• src/hg/makeDb/trackDb/human/hg38/regfunc.html
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    93ffd483ab062d09df2743ccc0e32013e91fbd76 Wed Apr 1 07:06:38 2026 -0700
    renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284
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    31b7d4342181171f8b8271e5ed5b5cdaa22feeb6 Wed Apr 1 07:30:30 2026 -0700
    fixing up regfunc docs and tdb
• src/hg/makeDb/trackDb/human/hg38/regfunc.ra
  • lines changed 6, context: html, text, full: html, text
    93ffd483ab062d09df2743ccc0e32013e91fbd76 Wed Apr 1 07:06:38 2026 -0700
    renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284
  • lines changed 3, context: html, text, full: html, text
    31b7d4342181171f8b8271e5ed5b5cdaa22feeb6 Wed Apr 1 07:30:30 2026 -0700
    fixing up regfunc docs and tdb
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    93ffd483ab062d09df2743ccc0e32013e91fbd76 Wed Apr 1 07:06:38 2026 -0700
    renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284
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    d1e99290a854df9b05063c10c91466f6e8fa034a Sun Apr 5 23:12:31 2026 -0700
    Revert "renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284" This reverts commit 93ffd483ab062d09df2743ccc0e32013e91fbd76.
• src/hg/makeDb/trackDb/human/lrSv.ra
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    5a202e0b6c8f6ec66e11233560d9dd90fc1bf087 Sun Apr 5 23:15:42 2026 -0700
    adding long-read SV track, no redmine yet
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    66419809158cb8192f2d8b19b43f4484a4d4c354 Mon Apr 6 08:57:28 2026 -0700
    tdb fix
• src/hg/makeDb/trackDb/human/lrSv1kgOnt.html
  • lines changed 97, context: html, text, full: html, text
    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/makeDb/trackDb/human/phasedVars.ra
  • lines changed 22, context: html, text, full: html, text
    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    e1b75109b63da525f8d7bf0da81a3c13a81ffc0a Wed Apr 1 09:21:29 2026 -0700
    Squashing old pennantIcons, no RM.
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    5a202e0b6c8f6ec66e11233560d9dd90fc1bf087 Sun Apr 5 23:15:42 2026 -0700
    adding long-read SV track, no redmine yet
• src/hg/makeDb/trackDb/mouse/mm10/cCREregistry.html
  • lines changed 40, context: html, text, full: html, text
    c27d515b7e62073ec2834f789f423d757e91b75d Mon Mar 30 17:16:33 2026 -0700
    Made some updates to the mm10 ENCODE4 cCREs track description page, refs #37131
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    b29509b0535fc8c0151dc3dc47d7be9ec2833294 Mon Mar 30 14:28:59 2026 -0700
    gcOnFly now with a density switch to go to backup bigWig file to avoid big computation refs #35958
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    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/hg/makeDb/trackDb/trackDb.ra
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    b29509b0535fc8c0151dc3dc47d7be9ec2833294 Mon Mar 30 14:28:59 2026 -0700
    gcOnFly now with a density switch to go to backup bigWig file to avoid big computation refs #35958
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    7d3f3b3e910daec7cc31cbbdafc45e5e71cdacf4 Mon Mar 30 14:51:27 2026 -0700
    no longer need the debug TDB label on gcOnFly track - it can be determined by item or UI clicks refs #35958
• src/hg/ratStuff/mafAddIRowsStream/mafAddIRowsStream.c
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    790660dbd19f460e345fad829ce38ea978e29c7b Sun Apr 5 19:01:24 2026 -0700
    claude author rewrite of mafAddIRows for 5X to 10X improvement in peak memory usage, and 100s of time faster for VGP 577 way alignments
• src/hg/ratStuff/mafAddIRowsStream/makefile
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    790660dbd19f460e345fad829ce38ea978e29c7b Sun Apr 5 19:01:24 2026 -0700
    claude author rewrite of mafAddIRows for 5X to 10X improvement in peak memory usage, and 100s of time faster for VGP 577 way alignments
• src/hg/utils/hubCheck/tests/expected/fieldCountMismatch.output.txt
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    a414117b65aed2e9b7ff503f5f14fe98b9d27531 Tue Mar 31 15:57:37 2026 -0700
    Add hubCheck test for bigBed field count mismatch, refs #36833 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/utils/hubCheck/tests/input/fieldCountMismatch.txt
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    a414117b65aed2e9b7ff503f5f14fe98b9d27531 Tue Mar 31 15:57:37 2026 -0700
    Add hubCheck test for bigBed field count mismatch, refs #36833 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/utils/hubCheck/tests/input/test6field.bb
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    a414117b65aed2e9b7ff503f5f14fe98b9d27531 Tue Mar 31 15:57:37 2026 -0700
    Add hubCheck test for bigBed field count mismatch, refs #36833 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/hg/utils/hubCheck/tests/makefile
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    a414117b65aed2e9b7ff503f5f14fe98b9d27531 Tue Mar 31 15:57:37 2026 -0700
    Add hubCheck test for bigBed field count mismatch, refs #36833 Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
• src/inc/common.h
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    98faa189349f1bb9b033f314ffe327541bacf290 Tue Mar 31 15:17:30 2026 -0700
    Add a new hgFindSpec setting, searchItemLabel, that allows using hgFindSpec defined labels (with variable substitution) as the label for each line of a search result. This only works for bigBed tracks. refs #37299
• src/lib/common.c
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    98faa189349f1bb9b033f314ffe327541bacf290 Tue Mar 31 15:17:30 2026 -0700
    Add a new hgFindSpec setting, searchItemLabel, that allows using hgFindSpec defined labels (with variable substitution) as the label for each line of a search result. This only works for bigBed tracks. refs #37299
• src/utils/bigGuessDb/bigGuessDb
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    dc1e0e76dbe49861bd0ebe8db64e27f587737794 Mon Mar 30 15:40:03 2026 -0700
    adding two more phased variants tracks, refs #37306
• src/utils/qa/mlqAutomate.py
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    81fc9a3788b59421d8efabfc9fa70857dc6dacda Tue Mar 31 15:34:36 2026 -0700
    Skip medical info spam rule for genome-www emails in mlqAutomate. The unmoderated genome-www list is only accessible to the Browser team, so personal medical information is not a privacy concern there. This prevents false positive spam classification of legitimate clinical genetics questions. refs #37320
• src/utils/qa/qaTestScript.py
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    2d1cf03e8f567934bcc86e93987cf7b10208b653 Tue Mar 31 10:18:40 2026 -0700
    Increasing the page load timeout for the chromAlias custom track test, No RM
• src/utils/qa/weeklybld/summaryEmail.sh
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    e0960d086b7c175622ba725214373b35a7542752 Tue Mar 31 15:16:05 2026 -0700
    Updating message to mention Jairo instead of Lou, no RM.

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