089c09e98db52e92da694ab1a0c8891c1a7fd3e8
gperez2
  Thu Apr 2 15:50:07 2026 -0700
Fix broken external links in trackDb HTML docs found by uiLinks cron (2026-03-23 run).

Updated 261 trackDb HTML and .ra files:
- Fixed 404s: replaced dead URLs (sequenceontology.org wiki, compgen.cshl.edu PDFs,
chori.org, PolyPhen v1, uswest.ensembl.org, RIKEN GSC) with current locations;
removed links for defunct sites (snpdata.cshl.edu, zfrhmaps, renlab encode3 download,
oia.gachon.ac.kr, phylohmm.pdf across 92 conservation track docs).
- Fixed 301s: updated http→https (encodeproject.org, flybase.org, gene-regulation.com,
drive5.com/muscle, microbesonline.org/fasttree, brain-map.org); updated moved domains
(blackwell-synergy→wiley, genome.cshlp.org path fix, sanger.ac.uk path fix);
removed hijacked domains (seqll.com, orfeomecollaboration.org, farnhamlab.com).
- Fixed 302s: updated http→https (ensembl.org, affymetrix.com, asntech.org,
cdna.eva.mpg.de, arcseqhub.com); updated moved domains (dfam.janelia.org→dfam.org,
hmmer.janelia.org→hmmer.org, immuneepitope.org→iedb.org, ensembl variation path).

No RM.

diff --git src/hg/makeDb/trackDb/fugu/ensGene.html src/hg/makeDb/trackDb/fugu/ensGene.html
index ee32657ce15..f86234b207f 100644
--- src/hg/makeDb/trackDb/fugu/ensGene.html
+++ src/hg/makeDb/trackDb/fugu/ensGene.html
@@ -1,20 +1,20 @@
 <h2>Description</h2>
 
 <p>
 These gene predictions were generated using the 
-<a href="http://www.ensembl.org/index.html" target="_blank">Ensembl</a> annotation system.
+<a href="https://www.ensembl.org/index.html" target="_blank">Ensembl</a> annotation system.
 </p>
 
 <h2>Methods</h2>
 
 <p>
 For a description of the methods used in Ensembl gene prediction, refer to 
 Hubbard <em>et al</em>. (2002) in the References section below.
 </p>
 
 <h2>Credits</h2>
 
 <p>
 The Fugu genome was annotated using the Ensembl system by the Fugu 
 informatics group at the 
 <a href="https://www.a-star.edu.sg/imcb" target="_blank">Institute