089c09e98db52e92da694ab1a0c8891c1a7fd3e8
gperez2
  Thu Apr 2 15:50:07 2026 -0700
Fix broken external links in trackDb HTML docs found by uiLinks cron (2026-03-23 run).

Updated 261 trackDb HTML and .ra files:
- Fixed 404s: replaced dead URLs (sequenceontology.org wiki, compgen.cshl.edu PDFs,
chori.org, PolyPhen v1, uswest.ensembl.org, RIKEN GSC) with current locations;
removed links for defunct sites (snpdata.cshl.edu, zfrhmaps, renlab encode3 download,
oia.gachon.ac.kr, phylohmm.pdf across 92 conservation track docs).
- Fixed 301s: updated http→https (encodeproject.org, flybase.org, gene-regulation.com,
drive5.com/muscle, microbesonline.org/fasttree, brain-map.org); updated moved domains
(blackwell-synergy→wiley, genome.cshlp.org path fix, sanger.ac.uk path fix);
removed hijacked domains (seqll.com, orfeomecollaboration.org, farnhamlab.com).
- Fixed 302s: updated http→https (ensembl.org, affymetrix.com, asntech.org,
cdna.eva.mpg.de, arcseqhub.com); updated moved domains (dfam.janelia.org→dfam.org,
hmmer.janelia.org→hmmer.org, immuneepitope.org→iedb.org, ensembl variation path).

No RM.

diff --git src/hg/makeDb/trackDb/human/affy500K.html src/hg/makeDb/trackDb/human/affy500K.html
index 49559ccb165..150190921b2 100644
--- src/hg/makeDb/trackDb/human/affy500K.html
+++ src/hg/makeDb/trackDb/human/affy500K.html
@@ -2,29 +2,29 @@
 
 <P>This track shows locations of the Single Nucleotide Polymorphisms
 on the Affymetrix 500K Mapping Array.  The SNPs in this track include
 all of the markers from the array that have been successfully mapped
 against the current assembly.</P>
 
 <P>The SNPs were selected from public domain databases. Genotypes for
 these markers were generated at Affymetrix using GeneChip(r) DNA
 analysis technology and are available at their site.</P>
 
 <H2>Credits</H2>
 
 <P>Thanks to <A HREF="https://www.ncbi.nlm.nih.gov/SNP"
 TARGET=_blank>dbSnp</A> at the NCBI for providing the public SNPs.
 
-<P>Thanks to <A HREF="http://www.affymetrix.com"
+<P>Thanks to <A HREF="https://www.affymetrix.com"
 TARGET=_blank>Affymetrix, Inc.</A> for developing the genotyping
 array.  For more details on this genotyping assay, please see the
 supplemental information on the <A
 HREF="https://www.affymetrix.com:443/support/technical/byproduct.affx?product=500k"
 TARGET=_blank>Affymetrix 500K SNP</A> product.</P>
 
 <H2>Terms of Use</H2>
 <P>Please see the <A HREF="https://www.affymetrix.com:443/site/terms.affx"
 TARGET=_blank>Terms and Conditions</A> for the use of this data at the
-<A HREF="http://www.affymetrix.com" TARGET=_blank>Affymetrix, Inc.</A>
+<A HREF="https://www.affymetrix.com" TARGET=_blank>Affymetrix, Inc.</A>
 site.</P>