089c09e98db52e92da694ab1a0c8891c1a7fd3e8
gperez2
Thu Apr 2 15:50:07 2026 -0700
Fix broken external links in trackDb HTML docs found by uiLinks cron (2026-03-23 run).
Updated 261 trackDb HTML and .ra files:
- Fixed 404s: replaced dead URLs (sequenceontology.org wiki, compgen.cshl.edu PDFs,
chori.org, PolyPhen v1, uswest.ensembl.org, RIKEN GSC) with current locations;
removed links for defunct sites (snpdata.cshl.edu, zfrhmaps, renlab encode3 download,
oia.gachon.ac.kr, phylohmm.pdf across 92 conservation track docs).
- Fixed 301s: updated http→https (encodeproject.org, flybase.org, gene-regulation.com,
drive5.com/muscle, microbesonline.org/fasttree, brain-map.org); updated moved domains
(blackwell-synergy→wiley, genome.cshlp.org path fix, sanger.ac.uk path fix);
removed hijacked domains (seqll.com, orfeomecollaboration.org, farnhamlab.com).
- Fixed 302s: updated http→https (ensembl.org, affymetrix.com, asntech.org,
cdna.eva.mpg.de, arcseqhub.com); updated moved domains (dfam.janelia.org→dfam.org,
hmmer.janelia.org→hmmer.org, immuneepitope.org→iedb.org, ensembl variation path).
No RM.
diff --git src/hg/makeDb/trackDb/human/snpArray.html src/hg/makeDb/trackDb/human/snpArray.html
index ec3d94b9cb0..2303f6f7021 100644
--- src/hg/makeDb/trackDb/human/snpArray.html
+++ src/hg/makeDb/trackDb/human/snpArray.html
@@ -103,41 +103,41 @@
known cytogenetic importance. Backbone markers provide genome-wide marker spacing of 10kb.
This is supplemented with dense coverage (at 6 kb spacing average) of ~250 genomic regions
commonly studied in cytogenetics labs and targeted coverage in ~400 additional genes,
subtelomeric regions, pericentromeric regions, and sex chromosomes.
An efficiency-optimized tagging strategy provides a panel for GWAS
(70% coverage in CEU at r2 > 0.8) in the highest throughput and most cost-effective
whole-genome DNA Analysis BeadChip.
References
More information on the Affymetrix arrays is available at these sites:
More information on the Illumina arrays is available at these sites: