089c09e98db52e92da694ab1a0c8891c1a7fd3e8
gperez2
  Thu Apr 2 15:50:07 2026 -0700
Fix broken external links in trackDb HTML docs found by uiLinks cron (2026-03-23 run).

Updated 261 trackDb HTML and .ra files:
- Fixed 404s: replaced dead URLs (sequenceontology.org wiki, compgen.cshl.edu PDFs,
chori.org, PolyPhen v1, uswest.ensembl.org, RIKEN GSC) with current locations;
removed links for defunct sites (snpdata.cshl.edu, zfrhmaps, renlab encode3 download,
oia.gachon.ac.kr, phylohmm.pdf across 92 conservation track docs).
- Fixed 301s: updated http→https (encodeproject.org, flybase.org, gene-regulation.com,
drive5.com/muscle, microbesonline.org/fasttree, brain-map.org); updated moved domains
(blackwell-synergy→wiley, genome.cshlp.org path fix, sanger.ac.uk path fix);
removed hijacked domains (seqll.com, orfeomecollaboration.org, farnhamlab.com).
- Fixed 302s: updated http→https (ensembl.org, affymetrix.com, asntech.org,
cdna.eva.mpg.de, arcseqhub.com); updated moved domains (dfam.janelia.org→dfam.org,
hmmer.janelia.org→hmmer.org, immuneepitope.org→iedb.org, ensembl variation path).

No RM.

diff --git src/hg/makeDb/trackDb/human/wgRnaOld.html src/hg/makeDb/trackDb/human/wgRnaOld.html
index ab6cbf54430..18333466fda 100644
--- src/hg/makeDb/trackDb/human/wgRnaOld.html
+++ src/hg/makeDb/trackDb/human/wgRnaOld.html
@@ -58,31 +58,31 @@
 Fonctionnelle des Génomes</A> (IFR109, Toulouse, France). </P>
 <P> 
 <A HREF="mailto:&#102;a&#110;&#104;s&#117;&#64;&#115;&#111;&#101;.&#117;c&#115;&#99;.&#101;&#100;&#117;">Fan Hsu</A> from the UCSC Genome Bioinformatics 
 Group created the combined annotation track.</P>
 
 <H2>References</H2>
 <P>
 When making use of these data, please cite: 
 <P>
 Griffiths-Jones S. 
 <A HREF="http://nar.oxfordjournals.org/cgi/content/abstract/32/suppl_1/D109" 
 TARGET=_blank>The microRNA Registry</A>.
 <em>Nucl. Acids Res.</em> 2004 Jan 1;32(D):D109-11.</P>
 <P>
 Weber MJ. 
-<A HREF="http://www.blackwell-synergy.com/doi/abs/10.1111/j.1432-1033.2004.04389.x"
+<A HREF="https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1432-1033.2004.04389.x"
 TARGET=_blank>New human and mouse microRNA genes found by homology search</A>.
 <em>Febs J.</em> 2005 Jan;272(1):59-73.</P>
 <P>
 You may also want to cite The Wellcome Trust Sanger Institute 
 <A HREF="http://www.sanger.ac.uk/Software/Rfam/mirna/"
 TARGET=_blank>miRNA Registry</A> and The Laboratoire de Biologie Moleculaire 
 Eucaryote <A HREF="http://www-snorna.biotoul.fr/" TARGET=_blank>snoRNA 
 database</A>.</P>
 <P>
 The following publication provides guidelines on miRNA annotation:
 Ambros V. <em>et al</em>., 
 <A HREF="http://www.rnajournal.org/cgi/content/abstract/9/3/277" 
 TARGET=_blank>A uniform system for microRNA annotation</A>.  
 <em>RNA.</em> 2003;9(3):277-9.</P>
 <P>