089c09e98db52e92da694ab1a0c8891c1a7fd3e8 gperez2 Thu Apr 2 15:50:07 2026 -0700 Fix broken external links in trackDb HTML docs found by uiLinks cron (2026-03-23 run). Updated 261 trackDb HTML and .ra files: - Fixed 404s: replaced dead URLs (sequenceontology.org wiki, compgen.cshl.edu PDFs, chori.org, PolyPhen v1, uswest.ensembl.org, RIKEN GSC) with current locations; removed links for defunct sites (snpdata.cshl.edu, zfrhmaps, renlab encode3 download, oia.gachon.ac.kr, phylohmm.pdf across 92 conservation track docs). - Fixed 301s: updated http→https (encodeproject.org, flybase.org, gene-regulation.com, drive5.com/muscle, microbesonline.org/fasttree, brain-map.org); updated moved domains (blackwell-synergy→wiley, genome.cshlp.org path fix, sanger.ac.uk path fix); removed hijacked domains (seqll.com, orfeomecollaboration.org, farnhamlab.com). - Fixed 302s: updated http→https (ensembl.org, affymetrix.com, asntech.org, cdna.eva.mpg.de, arcseqhub.com); updated moved domains (dfam.janelia.org→dfam.org, hmmer.janelia.org→hmmer.org, immuneepitope.org→iedb.org, ensembl variation path). No RM. diff --git src/hg/makeDb/trackDb/human/wgRnaOld.html src/hg/makeDb/trackDb/human/wgRnaOld.html index ab6cbf54430..18333466fda 100644 --- src/hg/makeDb/trackDb/human/wgRnaOld.html +++ src/hg/makeDb/trackDb/human/wgRnaOld.html @@ -58,31 +58,31 @@ Fonctionnelle des Génomes</A> (IFR109, Toulouse, France). </P> <P> <A HREF="mailto:fanhsu@soe.ucsc.edu">Fan Hsu</A> from the UCSC Genome Bioinformatics Group created the combined annotation track.</P> <H2>References</H2> <P> When making use of these data, please cite: <P> Griffiths-Jones S. <A HREF="http://nar.oxfordjournals.org/cgi/content/abstract/32/suppl_1/D109" TARGET=_blank>The microRNA Registry</A>. <em>Nucl. Acids Res.</em> 2004 Jan 1;32(D):D109-11.</P> <P> Weber MJ. -<A HREF="http://www.blackwell-synergy.com/doi/abs/10.1111/j.1432-1033.2004.04389.x" +<A HREF="https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1432-1033.2004.04389.x" TARGET=_blank>New human and mouse microRNA genes found by homology search</A>. <em>Febs J.</em> 2005 Jan;272(1):59-73.</P> <P> You may also want to cite The Wellcome Trust Sanger Institute <A HREF="http://www.sanger.ac.uk/Software/Rfam/mirna/" TARGET=_blank>miRNA Registry</A> and The Laboratoire de Biologie Moleculaire Eucaryote <A HREF="http://www-snorna.biotoul.fr/" TARGET=_blank>snoRNA database</A>.</P> <P> The following publication provides guidelines on miRNA annotation: Ambros V. <em>et al</em>., <A HREF="http://www.rnajournal.org/cgi/content/abstract/9/3/277" TARGET=_blank>A uniform system for microRNA annotation</A>. <em>RNA.</em> 2003;9(3):277-9.</P> <P>