ab4b62d2876e8ef84516ff751c2b8f90210563cb jnavarr5 Fri Apr 10 16:35:02 2026 -0700 Fixing some typos, refs #36652 #35420 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 0b9c316c753..6ff2fdbe1bf 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -75,50 +75,50 @@ Variation</b></a> track collection brings together population-level tandem repeat variation data from multiple sources: </p> <ul> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=webstr" target="_blank"><b>WebSTR</b></a> – 1,710,833 STR loci from the <a href="https://github.com/gymrek-lab/EnsembleTR" target="_blank">EnsembleTR</a> panel with allele frequency distributions for five continental populations from the <a href="https://www.internationalgenome.org/" target="_blank">1000 Genomes Project</a> (3,550 individuals). The EnsembleTR panel represents consensus calls from four STR genotyping methods (HipSTR, GangSTR, ExpansionHunter, and AdVNTR). </li> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=strchive" target="_blank"><b>STRchive</b></a> – 75 disease-associated tandem repeat expansion loci curated from published literature by the <a href="https://strchive.org" target="_blank">STRchive</a> project. Each locus includes - the pathogenic repeat motif, minimum pathogenic repeat count, mode of inheritance, and - associated disease. Items are colored by inheritance mode. + the pathogenic repeat motif, the minimum pathogenic repeat count, the mode of inheritance, and + the associated disease. Items are colored by inheritance mode. </li> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=trexplorer" target="_blank"><b>TRExplorer V2</b></a> – 5,599,658 tandem repeat loci (STRs and VNTRs) from the <a href="https://trexplorer.broadinstitute.org" target="_blank">TRExplorer</a> catalog at the Broad Institute, compiled from 17 sources including perfect repeats in the reference, polymorphic TRs from T2T assemblies, and curated disease-associated loci. Includes population allele frequency histograms from TenK10K and HPRC256 cohorts. </li> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=tommoStr" target="_blank"><b>ToMMo 61K STR</b></a> – 174,300 STR loci with allele count distributions from 61,000 Japanese individuals from the <a href="https://jmorp.megabank.tohoku.ac.jp" target="_blank">Tohoku Medical Megabank Organization (ToMMo)</a>, genotyped with Expansion Hunter. </li> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=viennaVntr" target="_blank"><b>1KG Vienna ONT VNTR</b></a> – 361,362 VNTR loci with allele statistics from 1,019 samples of the <a href="https://github.com/marschall-lab/project-ont-1kg" target="_blank">1000 Genomes ONT Vienna project</a>, genotyped with VAMOS from Oxford Nanopore long-read sequencing. - Unlike the other tracks which use short-read data, this track can span longer repeat regions. + Unlike the other tracks, which use short-read data, this track can span longer repeat regions. </li> </ul> <p> Additionally, a new <a href="/cgi-bin/hgTrackUi?db=hg38&g=gnomadStr" target="_blank"><b>gnomAD STR</b></a> track has been added under the gnomAD Variants collection. This track displays genotype data for 87 disease-associated STR loci from <a href="https://gnomad.broadinstitute.org/" target="_blank">gnomAD</a> v3.1.3, including loci associated with Huntington disease, fragile X syndrome, Friedreich ataxia, and various spinocerebellar ataxias. The data were generated using <a href="https://github.com/Illumina/ExpansionHunter" target="_blank">ExpansionHunter v5</a> on 18,511 whole-genome sequenced samples across 10 populations. Each locus shows the distribution of repeat allele sizes, providing a reference for normal and expanded allele ranges. </p>