2762a10400229116f476c3f526712c2d0126ed0c lrnassar Mon Apr 13 09:40:34 2026 -0700 Fix gray organ count in hg38 makedoc per CR feedback. refs #34923 diff --git src/hg/makeDb/doc/hg38/encode4.regulation.txt src/hg/makeDb/doc/hg38/encode4.regulation.txt index 2b5fadc56e3..0d43025038c 100644 --- src/hg/makeDb/doc/hg38/encode4.regulation.txt +++ src/hg/makeDb/doc/hg38/encode4.regulation.txt @@ -180,31 +180,31 @@ # Brain: dorsolateral prefrontal cortex, female 75y # Heart: right atrium auricular region, female 51y # Liver: right lobe, female 53y # TF ChIP (8): brain/heart/liver tissue CTCF + liver POLR2A # # All subtracks use S3 URLs (encode-public.s3.amazonaws.com) for bigDataUrl. ############################################################################## # Step 5c: Track color adjustments ############################################################################## # Organ colors follow the Weng lab canonical color mapping: # https://wiki.wenglab.org/references/color-mappings/ # 18 colors were darkened for contrast against white browser background while # preserving hue (canonical colors designed for dark portal background). -# 3 organs previously using default gray were given their canonical colors: +# 1 organ previously using default gray was given its canonical color: # urinary bladder: 194,33,39 # Color mapping wiki linked in Display Conventions of all multiWig HTML pages. ############################################################################## # Step 5d: Biosample column cleanup (2026-04-08) ############################################################################## # The _Biosample column in the Epigenetics metadata TSV had redundant # assay+type suffixes on peak entries (e.g., "Homo sapiens A549 ATAC peak"). # This information is already in the Assay and Data Type columns. # Removed suffixes from 3,154 entries using: cd /hive/users/lrnassar/claude/RM34923 python3 -c " import re