fa0ff693583dbd90241f3bd3b2dce6eafd974d6a chmalee Mon May 4 14:17:20 2026 -0700 Add a basic description page for myVariants tracks, refs #38808 diff --git src/hg/htdocs/inc/myVariantsDesc.html src/hg/htdocs/inc/myVariantsDesc.html new file mode 100644 index 00000000000..d272fe6dd9a --- /dev/null +++ src/hg/htdocs/inc/myVariantsDesc.html @@ -0,0 +1,51 @@ +<h2>Description</h2> +<p> +The <em>My Variants</em> track lets a signed-in user create, edit, and share a +personal set of variant annotations directly in the Genome Browser. +</p> + +<p> +<b>Important:</b> This feature is intended for exploratory, educational, and +demonstration use only. It must <b>not</b> be used to enter, store, or share +private patient data, identifiable clinical records, or any other protected +health information. Items written to a <em>My Variants</em> track are stored on +shared UCSC infrastructure and may be visible to other users when shared. +</p> + +<h2>Display Conventions and Configuration</h2> +<p> +Each item is drawn as a standard BED rectangle using the user-selected color. +A short mouseover label and a longer free-text description may be attached to +each item. +When the details page is opened, any overlaps with selected reference variant +tracks (for example, ClinVar and dbSNP common variants) are listed for context. +</p> + +<h2>Adding and Editing Variants</h2> +<p> +New variants can be added in one of three ways from the entry form: by HGVS or +item search, by a simple BED form, or by an advanced BED form that allows +user-defined extra fields. +A variant can also be created by drag-selecting a region on the browser image +and choosing the create-variant option from the popup menu. +Existing items can be edited or deleted at any time from the track's details +page. +</p> + +<h2>Sharing</h2> +<p> +A <em>My Variants</em> track can be shared read-only or with edit access, either +with a specific signed-in user or with anyone holding the share link. +Shared tracks are loaded automatically the next time the recipient opens the +Genome Browser, similar to a shared online document. +The most recent write wins; there is no per-item revision history at this time. +</p> + +<h2>Data Access</h2> +<p> +<em>My Variants</em> data are stored as a per-user custom track and can be +downloaded for the current assembly using the +<a href="hgTables" target="_blank">Table Browser</a>. +The data are not part of the public UCSC database and are not available through +the public REST API or the bulk download server. +</p>