78be2a814ea9a2f97515f8937b8d1480893b2822 hiram Fri May 8 12:02:51 2026 -0700 add plasmoDB as a naming scheme diff --git src/hg/utils/automation/aliasTextToBed.pl src/hg/utils/automation/aliasTextToBed.pl index 97115b67848..81a4d091d38 100755 --- src/hg/utils/automation/aliasTextToBed.pl +++ src/hg/utils/automation/aliasTextToBed.pl @@ -62,30 +62,31 @@ } close (SZ); my %nameLabels = ( "assembly" => "Assembly", "genbank" => "GenBank", "ncbi" => "NCBI", "refseq" => "RefSeq", "ucsc" => "UCSC", "ensembl" => "Ensembl", "xenbase" => "Xenbase", "chrNames" => "chrNames", "chrN" => "chrN", "VEuPathDB" => "VEuPathDB", "hprcV2" => "HPRCv2", + "plasmoDB" => "PlasmoDB", "custom" => "custom" ); open (AS, ">$opt_aliasAs") or die "can not write to $opt_aliasAs"; my $indexNames; $titleLine =~ s/^#\s+//; my @legendNames = split('\s+', $titleLine); my $expectFieldCount = scalar(@legendNames); my $i = 0; # output the .as definition printf AS "table chromAlias\n"; printf AS " \"chromAlias bigBed index\"\n"; printf AS " (\n";