Commits for jnavarr5

63c4992e866795e17433a11d8696eab70ad1e9d1 Tue May 5 10:51:35 2026 -0700

Fixing typo (SSREF --> SSREV). Updating short and longLabels, refs #28259
- src/hg/makeDb/trackDb/human/hg38/trackDb.30way.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.447way.ra - lines changed 3, context: html, text, full: html, text

434a78bb9336d3dfbc788083d03f76bcf643803a Tue May 5 13:17:40 2026 -0700

Adding the logoMaf line and updating the view limits for the SSREV tracks, refs #28259
- src/hg/makeDb/trackDb/human/hg38/trackDb.30way.ra - lines changed 2, context: html, text, full: html, text

5bf4519a366ba72f5ab328f50052ea8b64996229 Tue May 5 13:24:47 2026 -0700

Fixing broken links and fixing typos found by Claude, refs #28259
- src/hg/makeDb/trackDb/human/hg38/cons30way.html - lines changed 14, context: html, text, full: html, text

eeb891a1a770321ce23b4a6304d92f53bf0af243 Tue May 5 13:53:54 2026 -0700

Adding SSREV phyloP content to the cons30way and cactus447way description pages: new SSREV explanation in cons30way, rewrite of the cactus447way intro to list all four phyloP subtracks correctly, a new phyloP Methods subsection, the Pollard 2010 reference, and a missing <li> in the download list, refs #28259
- src/hg/makeDb/trackDb/human/hg38/cactus447way.html - lines changed 60, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/cons30way.html - lines changed 21, context: html, text, full: html, text

32b87a2e38fd80d8c3f0c1ffcf536f903bbf29c6 Tue May 5 15:28:59 2026 -0700

Removing lines from the makedoc since these tracks are now done, and not currently running, refs #28259
- src/hg/makeDb/doc/hg38/cactus447.txt - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/hg38/multiz30way.txt - lines changed 2, context: html, text, full: html, text

41ca3ca7e61769458b94f925a0696284ddc44192 Fri May 8 16:15:46 2026 -0700

Updating long and shortLabels to be less than 22 characters, refs #35101
- src/hg/makeDb/trackDb/human/hg38/ncOrfs.ra - lines changed 7, context: html, text, full: html, text

80a9c846173cd82685ec66c298090085f8720c1b Fri May 8 16:29:07 2026 -0700

Fixing reference issues found by Claude. Fixing the capitalization of GENCODE, refs #35101
- src/hg/makeDb/trackDb/human/hg38/gencNcOrfs.html - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/metamorf.html - lines changed 55, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/ncOrfs.html - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/openprot.html - lines changed 18, context: html, text, full: html, text