38bafc856320cf5360e0482faeee72b78f2ea963
lrnassar
  Tue May 5 14:13:30 2026 -0700
QA pass on varFreqs per-subtrack description pages: encode 3 plain emails, add target=_blank to 15 boilerplate REST API links, and add missing References sections (and Data Access on varFreqsAll). refs #36642

Mechanical fixes across 18 per-subtrack description pages:
- Encoded 3 plain author/contact emails: pfeliciano@simonsfoundation.org (sfariSparkExomes), m.hobbs@garvan.org.au (mgrb), contact_npco@a-star.edu.sg (npm).
- Added target="_blank" to 15 occurrences of the boilerplate "<a href=https://api.genome.ucsc.edu>REST API</a>" link across allofus, topmed, sfariSparkExomes, tommo60kjpn, alfaVcf, gasp, abraom, indigenomes, hrc, saudi, schema, sgdpFreq, gregor, hgdp1kFreq, colorsDbSnv.

Added missing References sections:
- allofus.html: All of Us Research Program 2024 Nature.
- topmed.html: Taliun 2021 Nature.
- alfaVcf.html: NCBI ALFA documentation citation (no peer-reviewed paper yet).
- gregor.html: GREGoR R04 Methods document + consortium website (no flagship publication yet).
- varFreqsAll.html: pointer to the supertrack's References section, plus tool citations (bcftools csq, Ensembl VEP).

Added missing Data Access section on varFreqsAll.html explaining that the merged callset is not downloadable due to mixed source-data licensing, but can be reconstructed from the per-subtrack VCFs using the conversion scripts on GitHub.

All 25 unique varFreqs description pages now have Description, Methods, Data Access, References. No non-ASCII characters and no inline event handlers across the set.

diff --git src/hg/makeDb/trackDb/human/indigenomes.html src/hg/makeDb/trackDb/human/indigenomes.html
index 87b91cbdda5..fd599135951 100644
--- src/hg/makeDb/trackDb/human/indigenomes.html
+++ src/hg/makeDb/trackDb/human/indigenomes.html
@@ -1,29 +1,29 @@
 <h2>Description</h2>
 <p>
 <a href="https://clingen.igib.res.in/indigen/" target="_blank">IndiGenomes</a> provides
 whole genome sequencing data of 1,029 healthy Indian individuals under the pilot phase of the
 &quot;IndiGen&quot; program. Only the allele frequency is available from this project. The website
 also provides SV call and Alu insertion VCFs.
 </p>
 
 <h2>Data Access</h2>
 <p>
 The data can be explored interactively with the
 <a href="../cgi-bin/hgTables">Table Browser</a> or the
 <a href="../cgi-bin/hgIntegrator">Data Integrator</a>.
-For programmatic access, our <a href="https://api.genome.ucsc.edu">REST API</a> can be used; the
+For programmatic access, our <a href="https://api.genome.ucsc.edu" target="_blank">REST API</a> can be used; the
 track name is <em>indigenomes</em>.
 For bulk download, the VCF file can be obtained from
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/varFreqs/" target="_blank">our download server</a>.
 </p>
 <p>
 The original data can also be downloaded from the <a href="https://clingen.igib.res.in/indigen/"
 target="_blank">IndiGen website</a>.
 </p>
 
 <h2>Methods</h2>
 <p>
 Genomic DNA was extracted from 5 ml of peripheral blood collected via venipuncture from
 1,029 self-declared healthy Indian individuals representing diverse geographic, ethnic, and
 linguistic groups, using the salting-out method. Whole-genome libraries were prepared using
 the TruSeq DNA PCR-free library preparation kit (Illumina). Sequencing was performed on the