38bafc856320cf5360e0482faeee72b78f2ea963
lrnassar
  Tue May 5 14:13:30 2026 -0700
QA pass on varFreqs per-subtrack description pages: encode 3 plain emails, add target=_blank to 15 boilerplate REST API links, and add missing References sections (and Data Access on varFreqsAll). refs #36642

Mechanical fixes across 18 per-subtrack description pages:
- Encoded 3 plain author/contact emails: pfeliciano@simonsfoundation.org (sfariSparkExomes), m.hobbs@garvan.org.au (mgrb), contact_npco@a-star.edu.sg (npm).
- Added target="_blank" to 15 occurrences of the boilerplate "<a href=https://api.genome.ucsc.edu>REST API</a>" link across allofus, topmed, sfariSparkExomes, tommo60kjpn, alfaVcf, gasp, abraom, indigenomes, hrc, saudi, schema, sgdpFreq, gregor, hgdp1kFreq, colorsDbSnv.

Added missing References sections:
- allofus.html: All of Us Research Program 2024 Nature.
- topmed.html: Taliun 2021 Nature.
- alfaVcf.html: NCBI ALFA documentation citation (no peer-reviewed paper yet).
- gregor.html: GREGoR R04 Methods document + consortium website (no flagship publication yet).
- varFreqsAll.html: pointer to the supertrack's References section, plus tool citations (bcftools csq, Ensembl VEP).

Added missing Data Access section on varFreqsAll.html explaining that the merged callset is not downloadable due to mixed source-data licensing, but can be reconstructed from the per-subtrack VCFs using the conversion scripts on GitHub.

All 25 unique varFreqs description pages now have Description, Methods, Data Access, References. No non-ASCII characters and no inline event handlers across the set.

diff --git src/hg/makeDb/trackDb/human/saudi.html src/hg/makeDb/trackDb/human/saudi.html
index fdb41d9141d..177ef275165 100644
--- src/hg/makeDb/trackDb/human/saudi.html
+++ src/hg/makeDb/trackDb/human/saudi.html
@@ -1,29 +1,29 @@
 <h2>Description</h2>
 <p>
 Variant frequencies from 302 whole genomes at 30x coverage from the
 <a href="https://www.vision2030.gov.sa/en/explore/projects/the-saudi-genome-program"
 target="_blank">Saudi Genome Program</a>. The genotyping data and imputations from 3,352
 individuals do not seem to be available publicly.
 </p>
 
 <h2>Data Access</h2>
 <p>
 The data can be explored interactively with the
 <a href="../cgi-bin/hgTables">Table Browser</a> or the
 <a href="../cgi-bin/hgIntegrator">Data Integrator</a>.
-For programmatic access, our <a href="https://api.genome.ucsc.edu">REST API</a> can be used; the
+For programmatic access, our <a href="https://api.genome.ucsc.edu" target="_blank">REST API</a> can be used; the
 track name is <em>saudi</em>.
 For bulk download, the VCF file can be obtained from
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/varFreqs/" target="_blank">our download server</a>.
 </p>
 <p>
 The original data were downloaded from
 <a href="https://figshare.com/articles/dataset/A_list_of_Saudi_Arabian_variants_and_their_allele_frequencies/28059686/1?file=51297884"
 target="_blank">Figshare</a> and converted to VCF.
 </p>
 
 <h2>Methods</h2>
 <p>
 Whole-genome sequencing of 302 Saudi Arabian individuals was performed on the Illumina HiSeq
 X Ten platform using TruSeq Nano DNA library preparation at 30x target coverage. Sequencing and
 initial bioinformatics processing were carried out by deCODE Genetics (Reykjav&iacute;k, Iceland).