ec5c73f4dc3ef4beae16fa1c12b7e5bf872bb73d
lrnassar
  Tue May 5 15:04:39 2026 -0700
varFreqs: fix gaspIndel bigDataUrl after Max's GenomeAsia hg38 lift; add Tishkoff180 to combined-track filter UI; sync databases.tsv with deployed bigBed; minor description-page corrections. refs #36642

GenomeAsia hg38 lift (May 5 2026, by Max):
- gaspIndel.bigDataUrl was pointing at the old GRCh37 filename "All.indels.annot.cont_withmaf.vcf.gz" which was renamed to "ga100k.indels.vcf.gz" during the lift; this left the gaspIndel track broken on the sandbox until the trackdb stanza was updated to match.
- gasp/gaspIndel dataVersion strings updated from "Pilot 2019 (GRCh37 - to be lifted)" to "Pilot 2019 (lifted to hg38, May 2026)".
- databases.tsv: also updated GenomeAsiaIndel path to ga100k.indels.vcf.gz so the next varFreqsAll rebuild reads from the lifted file.

Tishkoff180 in varFreqsAll.bb but unfilterable (fresh-eyes audit finding):
- Added Tishkoff180 to filterValues.sources and added filterByRange.Tishkoff180AF / Tishkoff180AC entries.
- Added Tishkoff180 (and SVatalog) rows to databases.tsv to match the deployed bigBed (which already has those columns).

Description-page corrections:
- varFreqsAll.html: "20 population databases" -> "25 source databases" (matches actual count); HGDP+1kG bullet "European" -> "Non-Finnish European" to disambiguate from Finnish (gnomAD's nfe).
- varFreqs.html: GenomeAsia row in the Available Datasets table updated from 3 to 7 sub-populations (NEA/SEA/SAS plus the previously hidden OCE/AMR/AFR/WER) so the table matches what the data exposes once Max's rebuild populates the new filter columns.
- KOVA longLabel: "1.9k WGS+3.5k WES" -> "1.9k WGS+3.4k WES" (3.4k is correct per Lee 2017 and kova.html).

diff --git src/hg/makeDb/trackDb/human/varFreqs.html src/hg/makeDb/trackDb/human/varFreqs.html
index 34a4119aca8..dbdb68feb5e 100644
--- src/hg/makeDb/trackDb/human/varFreqs.html
+++ src/hg/makeDb/trackDb/human/varFreqs.html
@@ -147,31 +147,32 @@
 <tr>
   <td><a href="hgTrackUi?g=mgrb">Australia MGRB</a></td>
   <td>Australia</td>
   <td>4k</td>
   <td>WGS</td>
   <td>Healthy elderly (age &ge;70)</td>
   <td>&mdash;</td>
   <td>No</td>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=gasp">GenomeAsia Pilot</a></td>
   <td>Asia (219 groups)</td>
   <td>1.7k</td>
   <td>WGS</td>
   <td>Diverse populations across Asia</td>
-  <td>Northeast Asian, Southeast Asian, South Asian</td>
+  <td>Northeast Asian, Southeast Asian, South Asian, Oceanian, American, African,
+      Western European Reference</td>
   <td>Yes</td>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=abraom">ABraOM Brazil</a></td>
   <td>Brazil</td>
   <td>1.2k</td>
   <td>WGS</td>
   <td>Elderly admixed individuals (S&atilde;o Paulo)</td>
   <td>&mdash;</td>
   <td>Yes</td>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=indigenomes">IndiGenomes</a></td>
   <td>India</td>
   <td>1k</td>