File Changes for gperez2

v497_base to v498_preview (2026-04-20 to 2026-04-27) v498

• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 1, context: html, text, full: html, text
    ac8d49f37257e983488864f0bb6712a9260e10c1 Fri Apr 24 14:05:10 2026 -0700
    Fix incorrect skipFields syntax in trackDbLibrary.shtml to match the comma-separated form used in the example and parsed by hgc.c. refs #36203
• src/hg/makeDb/trackDb/mouse/mm10/cCREregistry.html
  • lines changed 1, context: html, text, full: html, text
    52ebb985f6e3658f463e971b7acd4c3959d36f92 Wed Apr 22 17:38:06 2026 -0700
    Enlarged classification diagram (40% to 60%) on the cCRE registry and Core Collection description pages. Updated the shortLabels on all 90 Core Collection subtracks with biosample + age + assay labels. refs #37131
• src/hg/makeDb/trackDb/mouse/mm10/coreCollection.html
  • lines changed 1, context: html, text, full: html, text
    52ebb985f6e3658f463e971b7acd4c3959d36f92 Wed Apr 22 17:38:06 2026 -0700
    Enlarged classification diagram (40% to 60%) on the cCRE registry and Core Collection description pages. Updated the shortLabels on all 90 Core Collection subtracks with biosample + age + assay labels. refs #37131
  • lines changed 8, context: html, text, full: html, text
    563389a6e1bce94aafe4ec991c064e3d204670ff Wed Apr 22 18:16:44 2026 -0700
    Added signal track color descriptions (DNase green, H3K4me3 red, H3K27ac yellow, CTCF blue) to the mm10 Core Collection description page, with a note that the signal colors are independent from the cCRE classification colors. refs #37131
• src/hg/makeDb/trackDb/mouse/mm10/developmentTimecourseM21mm10FPKM.html
  • lines changed 66, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouse/mm10/developmentTimecourseM21mm10TPM.html
  • lines changed 66, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouse/mm10/developmentTimecourseM4mm10FPKM.html
  • lines changed 66, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouse/mm10/developmentTimecourseM4mm10TPM.html
  • lines changed 66, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouse/mm10/encode4.ccres.ra
  • lines changed 90, context: html, text, full: html, text
    52ebb985f6e3658f463e971b7acd4c3959d36f92 Wed Apr 22 17:38:06 2026 -0700
    Enlarged classification diagram (40% to 60%) on the cCRE registry and Core Collection description pages. Updated the shortLabels on all 90 Core Collection subtracks with biosample + age + assay labels. refs #37131
• src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.html
  • lines changed 67, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouse/mm39/developmentTimecourseM21mm39FPKM.html
  • lines changed 66, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouse/mm39/developmentTimecourseM21mm39TPM.html
  • lines changed 66, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouse/mm39/mouseDevTimecourse.html
  • lines changed 67, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouseDevTimecourseCreditsAndReferences.shared.html
  • lines changed 34, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/hg/makeDb/trackDb/mouseDevTimecourseDisplay.shared.html
  • lines changed 32, context: html, text, full: html, text
    26c4835e47a40f162ae82c0ea20e1997f42bc4ad Tue Apr 21 16:35:37 2026 -0700
    Moving shared HTML content in mouseDevTimecourse track description pages into shared include files using Claude. refs #37414
• src/utils/qa/hubPublicAutoUpdate
  • lines changed 1, context: html, text, full: html, text
    46ad8ee25abcc7c81cd3005972b9069f2f14b5c5 Thu Apr 23 12:09:16 2026 -0700
    Updating hubPublicMail and hubPublicAutoUpdate crons to correctly detect and contact authors of broken public hubs. hubPublicMail now uses curl instead of python-requests (handles Cloudflare bot-blocks and 4xx/5xx responses that requests silently treats as successful), falls back to hubPublic.email as a secondary source so newly-added broken hubs still accumulate failCount, and strips the mailto: prefix in parseEmail. hubPublicAutoUpdate now escapes double quotes on email values. No RM
• src/utils/qa/hubPublicMail
  • lines changed 56, context: html, text, full: html, text
    46ad8ee25abcc7c81cd3005972b9069f2f14b5c5 Thu Apr 23 12:09:16 2026 -0700
    Updating hubPublicMail and hubPublicAutoUpdate crons to correctly detect and contact authors of broken public hubs. hubPublicMail now uses curl instead of python-requests (handles Cloudflare bot-blocks and 4xx/5xx responses that requests silently treats as successful), falls back to hubPublic.email as a secondary source so newly-added broken hubs still accumulate failCount, and strips the mailto: prefix in parseEmail. hubPublicAutoUpdate now escapes double quotes on email values. No RM