File Changes for angie

v498_preview to v498_preview2 (2026-04-27 to 2026-05-04) v498

• src/hg/hgPhyloPlace/hgPhyloPlace.c
  • lines changed 8, context: html, text, full: html, text
    0750648bee41e57d7f1cbc3de8e3d9177bfd4c70 Fri May 1 10:02:25 2026 -0700
    Initial support for ripples seach in usher-sampled-server. Enabled by config param ripplesEnabled. If enabled, there is a new checkbox for the user to click if they want the extra search. Currently hardcoded to max of 10 sequences, otherwise extra search is not done (too slow). Ripples results, if any, are displayed in a table before the usual summary table.
• src/hg/hgPhyloPlace/phyloPlace.c
  • lines changed 116, context: html, text, full: html, text
    0750648bee41e57d7f1cbc3de8e3d9177bfd4c70 Fri May 1 10:02:25 2026 -0700
    Initial support for ripples seach in usher-sampled-server. Enabled by config param ripplesEnabled. If enabled, there is a new checkbox for the user to click if they want the extra search. Currently hardcoded to max of 10 sequences, otherwise extra search is not done (too slow). Ripples results, if any, are displayed in a table before the usual summary table.
• src/hg/hgPhyloPlace/phyloPlace.h
  • lines changed 34, context: html, text, full: html, text
    0750648bee41e57d7f1cbc3de8e3d9177bfd4c70 Fri May 1 10:02:25 2026 -0700
    Initial support for ripples seach in usher-sampled-server. Enabled by config param ripplesEnabled. If enabled, there is a new checkbox for the user to click if they want the extra search. Currently hardcoded to max of 10 sequences, otherwise extra search is not done (too slow). Ripples results, if any, are displayed in a table before the usual summary table.
• src/hg/hgPhyloPlace/runUsher.c
  • lines changed 346, context: html, text, full: html, text
    0750648bee41e57d7f1cbc3de8e3d9177bfd4c70 Fri May 1 10:02:25 2026 -0700
    Initial support for ripples seach in usher-sampled-server. Enabled by config param ripplesEnabled. If enabled, there is a new checkbox for the user to click if they want the extra search. Currently hardcoded to max of 10 sequences, otherwise extra search is not done (too slow). Ripples results, if any, are displayed in a table before the usual summary table.
• src/hg/utils/otto/measles/buildTree.sh
  • lines changed 89, context: html, text, full: html, text
    6bc045a7d9e23c14433beeeaecf349ff5d5785a1 Wed Apr 15 11:03:33 2026 -0700
    Use viral_usher to build daily measles tree.
• src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv
  • lines changed 17, context: html, text, full: html, text
    bc1dd635cfd41140693da19ddcd578ad3f5b30d6 Fri May 1 10:03:42 2026 -0700
    Added new lineages.