bdc5df573ffaa879405a4e13f10c205fed01c4d1
hiram
  Fri May 1 12:55:06 2026 -0700
explicit /cluster/bin/ path names for kent binaries to allow these scripts to function in cron jobs refs #31811

diff --git src/hg/utils/automation/asmHubAugustusGene.pl src/hg/utils/automation/asmHubAugustusGene.pl
index 1f65119c9cb..d497434e0c5 100755
--- src/hg/utils/automation/asmHubAugustusGene.pl
+++ src/hg/utils/automation/asmHubAugustusGene.pl
@@ -28,31 +28,31 @@
 
 if ( ! -s $augustusBbi ) {
   printf STDERR "ERROR: can not find augustus bbi file:\n\t'%s'\n", $augustusBbi;
   exit 255;
 }
 
 my $em = "<em>";
 my $noEm = "</em>";
 my $assemblyDate = `grep -v "^#" $namesFile | cut -f9`;
 chomp $assemblyDate;
 my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
 chomp $ncbiAssemblyId;
 my $organism = `grep -v "^#" $namesFile | cut -f5`;
 chomp $organism;
 
-my $geneCount = `bigBedInfo $augustusBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/Gene count/; s/ basesCovered/; Bases covered/;'`;
+my $geneCount = `/cluster/bin/x86_64/bigBedInfo $augustusBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/Gene count/; s/ basesCovered/; Bases covered/;'`;
 chomp $geneCount;
 
 print <<_EOF_
 <h2>Description</h2>
 <p>
 This track shows <i>ab initio</i> predictions from the program
   <a href="http://bioinf.uni-greifswald.de/augustus/"
      target="_blank">AUGUSTUS</a> (version 3.1).
 for the $assemblyDate $em${organism}$noEm/$asmId genome assembly.<br>
 <br>
 The predictions are based on the genome sequence alone.<br>
 <br>
 $geneCount
 </p>