bdc5df573ffaa879405a4e13f10c205fed01c4d1
hiram
  Fri May 1 12:55:06 2026 -0700
explicit /cluster/bin/ path names for kent binaries to allow these scripts to function in cron jobs refs #31811

diff --git src/hg/utils/automation/asmHubCpG.pl src/hg/utils/automation/asmHubCpG.pl
index 51e2bd7b22b..31d2da09eea 100755
--- src/hg/utils/automation/asmHubCpG.pl
+++ src/hg/utils/automation/asmHubCpG.pl
@@ -86,37 +86,37 @@
 (twice the CpG count) to the length.  The ratio of observed to expected 
 CpG is calculated according to the formula (cited in 
 Gardiner-Garden <em>et al</em>. (1987)):
 
 <pre>    Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)</pre>
 
 where N = length of sequence.</p>
 <h2>CpG item counts</h2>
 <p>
 <ul>
 _EOF_
    ;
 
 
 if ( -s $maskedBbi ) {
-  my $maskedCount = `bigBedInfo $maskedBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/item count/; s/basesCovered/bases covered/;'`;
+  my $maskedCount = `/cluster/bin/x86_64/bigBedInfo $maskedBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/item count/; s/basesCovered/bases covered/;'`;
   chomp $maskedCount;
   printf "<li>masked sequence: %s</li>\n", $maskedCount;
 }
 
 if ( -s $unmaskedBbi ) {
-  my $unmaskedCount = `bigBedInfo $unmaskedBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/item count/; s/basesCovered/bases covered/;'`;
+  my $unmaskedCount = `/cluster/bin/x86_64/bigBedInfo $unmaskedBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/item count/; s/basesCovered/bases covered/;'`;
   chomp $unmaskedCount;
   printf "<li>unmasked sequence: %s</li>\n", $unmaskedCount;
 }
 
 print <<_EOF_
 </ul>
 </p>
 <h2>Credits</h2>
 
 <p>This track was generated using a modification of a program developed by G. Miklem and L. Hillier 
 (unpublished).</p>
 
 <h2>References</h2>
 
 <p>