bdc5df573ffaa879405a4e13f10c205fed01c4d1
hiram
  Fri May 1 12:55:06 2026 -0700
explicit /cluster/bin/ path names for kent binaries to allow these scripts to function in cron jobs refs #31811

diff --git src/hg/utils/automation/asmHubNcbiGene.pl src/hg/utils/automation/asmHubNcbiGene.pl
index deb55c43964..c6ccac395bc 100755
--- src/hg/utils/automation/asmHubNcbiGene.pl
+++ src/hg/utils/automation/asmHubNcbiGene.pl
@@ -33,31 +33,31 @@
 my $trackDataDir = shift;
 my $ncbiGeneBbi = "$trackDataDir/ncbiGene/$asmId.ncbiGene.bb";
 my $asmType = "refseq";
 
 if ( ! -s $ncbiGeneBbi ) {
   printf STDERR "ERROR: can not find $asmId.ncbiGene.bb file\n";
   exit 255;
 }
 
 my @partNames = split('_', $ncbiAsmId);
 my $ftpDirPath = sprintf("%s/%s/%s/%s/%s", $partNames[0],
    substr($partNames[1],0,3), substr($partNames[1],3,3),
    substr($partNames[1],6,3), $ncbiAsmId);
 
 $asmType = "genbank" if ($partNames[0] =~ m/GCA/);
-my $totalBases = `ave -col=2 $trackDataDir/../${asmId}.chrom.sizes | grep "^total" | awk '{printf "%d", \$2}'`;
+my $totalBases = `/cluster/bin/x86_64/ave -col=2 $trackDataDir/../${asmId}.chrom.sizes | grep "^total" | awk '{printf "%d", \$2}'`;
 chomp $totalBases;
 my $geneStats = `cat $trackDataDir/ncbiGene/${asmId}.ncbiGene.stats.txt | awk '{printf "%d\\n", \$2}' | xargs echo`;
 chomp $geneStats;
 my ($itemCount, $basesCovered) = split('\s+', $geneStats);
 my $percentCoverage = sprintf("%.3f", 100.0 * $basesCovered / $totalBases);
 $itemCount = commify($itemCount);
 $basesCovered = commify($basesCovered);
 $totalBases = commify($totalBases);
 
 my $em = "<em>";
 my $noEm = "</em>";
 my $assemblyDate = `grep -v "^#" $namesFile | cut -f9`;
 chomp $assemblyDate;
 my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
 chomp $ncbiAssemblyId;