bdc5df573ffaa879405a4e13f10c205fed01c4d1
hiram
  Fri May 1 12:55:06 2026 -0700
explicit /cluster/bin/ path names for kent binaries to allow these scripts to function in cron jobs refs #31811

diff --git src/hg/utils/automation/asmHubTanDups.pl src/hg/utils/automation/asmHubTanDups.pl
index 642d5de4cbd..e422268dc7f 100755
--- src/hg/utils/automation/asmHubTanDups.pl
+++ src/hg/utils/automation/asmHubTanDups.pl
@@ -28,36 +28,36 @@
 }
 
 my $em = "<em>";
 my $noEm = "</em>";
 my $assemblyDate = `grep -v "^#" $namesFile | cut -f9`;
 chomp $assemblyDate;
 my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
 chomp $ncbiAssemblyId;
 my $organism = `grep -v "^#" $namesFile | cut -f5`;
 chomp $organism;
 
 my $gapOverlapItemCount = "<no items in this track>";
 my $tandemDupsItemCount = "<no items in this track>";
 
 if ( -s $gapOverlapBbi ) {
-  $gapOverlapItemCount = `bigBedInfo $gapOverlapBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/Item count/; s/ basesCovered/; Bases covered/;'`;
+  $gapOverlapItemCount = `/cluster/bin/x86_64/bigBedInfo $gapOverlapBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/Item count/; s/ basesCovered/; Bases covered/;'`;
   chomp $gapOverlapItemCount;
 }
 
 if ( -s $tandemDupsBbi ) {
-  $tandemDupsItemCount = `bigBedInfo $tandemDupsBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/Item count/; s/ basesCovered/; Bases covered/;'`;
+  $tandemDupsItemCount = `/cluster/bin/x86_64/bigBedInfo $tandemDupsBbi | egrep "itemCount:|basesCovered:" | xargs echo | sed -e 's/itemCount/Item count/; s/ basesCovered/; Bases covered/;'`;
   chomp $tandemDupsItemCount;
 }
 
 print <<_EOF_
 <h2>Description</h2>
 <p>
 This track indicates any pair of exactly identical sequence
 for the $assemblyDate $em${organism}$noEm/$asmId genome assembly.
 </p>
 
 <p>
 There may be two tracks in this composite collection:
 <ul> 
 <li> Gap Overlaps - Paired exactly identical sequence on each side of a gap</li>
 <li> Tandem Dups - Paired exactly identical sequence survey over entire genome assembly