bdc5df573ffaa879405a4e13f10c205fed01c4d1
hiram
  Fri May 1 12:55:06 2026 -0700
explicit /cluster/bin/ path names for kent binaries to allow these scripts to function in cron jobs refs #31811

diff --git src/hg/utils/automation/asmHubWindowMasker.pl src/hg/utils/automation/asmHubWindowMasker.pl
index e779b2e8074..b04a39edf5e 100755
--- src/hg/utils/automation/asmHubWindowMasker.pl
+++ src/hg/utils/automation/asmHubWindowMasker.pl
@@ -23,31 +23,31 @@
 my $chromSizes = "$buildDir/$asmId.chrom.sizes";
 
 if ( ! -s $wmBbi ) {
   printf STDERR "ERROR: can not find windowMasker bbi file:\n\t'%s'\n", $wmBbi;
   exit 255;
 }
 
 my $em = "<em>";
 my $noEm = "</em>";
 my $assemblyDate = `grep -v "^#" $namesFile | cut -f9`;
 chomp $assemblyDate;
 my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
 chomp $ncbiAssemblyId;
 my $organism = `grep -v "^#" $namesFile | cut -f5`;
 chomp $organism;
-my $basesCovered = `bigBedInfo $wmBbi | egrep "basesCovered:" | sed -e 's/basesCovered: //;'`;
+my $basesCovered = `/cluster/bin/x86_64/bigBedInfo $wmBbi | egrep "basesCovered:" | sed -e 's/basesCovered: //;'`;
 chomp $basesCovered;
 my $bases = $basesCovered;
 $bases =~ s/,//g;
 my $asmSize = &AsmHub::asmSize($chromSizes);
 my $percentCoverage = sprintf("%.2f", (100.0 * $bases) / $asmSize);
 $asmSize = &AsmHub::commify($asmSize);
 
 print <<_EOF_
 <h2>Description</h2>
 <p>
 This track depicts masked sequence as determined by <a href="
 http://bioinformatics.oxfordjournals.org/content/22/2/134.full" target="_blank">WindowMasker</a> on the
 the $assemblyDate $em${organism}$noEm/$asmId/$ncbiAssemblyId genome assembly.
 The WindowMasker tool is included in the NCBI C++ toolkit. The source code
 for the entire toolkit is available from the NCBI