dca6b246ce843e81430fbcda629c2478876b16fb hiram Fri May 1 15:45:20 2026 -0700 silence in the back there refs #31811 diff --git src/hg/utils/otto/userRequests/ottoRequestWatch.sh src/hg/utils/otto/userRequests/ottoRequestWatch.sh index c7b047e5e67..2d9fe3f6c56 100755 --- src/hg/utils/otto/userRequests/ottoRequestWatch.sh +++ src/hg/utils/otto/userRequests/ottoRequestWatch.sh @@ -232,30 +232,31 @@ printf "ERROR: installLinks: addQuickLift.py failed for %s -> %s\n" \ "${tDb}" "${qDb}" 1>&2 return 1 fi return 0 } ############################################################################## ############################################################################## ### refresh Galaxy queue status snapshot for ottoRequestView.cgi ############################################################################## export galaxyStatusFile="/data/apache/trash/ottoRequestGalaxyStatus.json" export profileJson="${HOME}/.planemo/profiles/vgp/planemo_profile_options.json" gsTmp=$(mktemp "${galaxyStatusFile}.XXXXXX") if timeout 45 "${scriptDir}/galaxyStatus.py" "${profileJson}" > "${gsTmp}" 2>/dev/null; then + chmod 664 "${gsTmp}" mv "${gsTmp}" "${galaxyStatusFile}" else rm -f "${gsTmp}" # printf "# WARNING: galaxyStatus.py failed, leaving stale snapshot\n" 1>&2 fi ############################################################################## ############################################################################ # phase 1: new requests needing alignment setup - status=1 AND buildDir='' ############################################################################ while read -r reqId; do # printf "# starting alignment for request %s\n" "${reqId}" 1>&2 if ! "${scriptDir}/ottoRequestAlign.sh" "${reqId}"; then printf "# alignment setup FAILED for request %s\n" "${reqId}" 1>&2 setErrorStatus "${reqId}"