23a1d303af11df08a568807aa65c21d973b4fc1a jnavarr5 Wed Apr 29 16:32:15 2026 -0700 Fixing the table layout, refs #35059 diff --git src/hg/makeDb/trackDb/human/cloneEndSuper.html src/hg/makeDb/trackDb/human/cloneEndSuper.html index 2ba77ad112b..32781dfd8af 100644 --- src/hg/makeDb/trackDb/human/cloneEndSuper.html +++ src/hg/makeDb/trackDb/human/cloneEndSuper.html @@ -36,58 +36,58 @@ NCBI Clone DB FTP site <A HREF="ftp://ftp.ncbi.nih.gov/repository/clone/reports/Homo_sapiens/" TARGET=_blank>ftp.ncbi.nih.gov/repository/clone/reports/Homo_sapiens/</A> *.GCF_000001405.26.106.*.gff files.</P> <P> UCSC filtered the NCBI Clone DB mapped ends to drop ends that mapped to a region that was three times longer than the median size of the clones in the library. Only libraries with more than 30,000 clones are included in this track display.</P> <P> Click through on displayed items to the Clone DB database information, including <A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET=_blank>Clone DB distributor</A> references.</P> <TABLE BORDER=1> -<TR><TH COLSPAN=7>clone information from NCBI Clone DB and UCSC mapping statistics</TH> - <TH>library<BR>name</TH> +<TR><TH COLSPAN=7>clone information from NCBI Clone DB and UCSC mapping statistics</TH></TR> +<TR><TH>library<BR>name</TH> <TH>total<BR>clones</TH> <TH>total end<BR>sequences</TH> <TH>NCBI mapped<BR>ends</TH> <TH>UCSC filtered<BR>ends</TH> <TH>UCSC<BR>dropped</TH> <TH>per-cent<BR>dropped</TH> </TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC8</A></TH><TD ALIGN=RIGHT>2,007,047</TD><TD ALIGN=RIGHT>3,888,476</TD><TD ALIGN=RIGHT>1,205,466</TD><TD ALIGN=RIGHT>1,192,784</TD><TD ALIGN=RIGHT>12,682</TD><TD ALIGN=RIGHT>% 1.05</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">WI2</A></TH><TD ALIGN=RIGHT>1,122,564</TD><TD ALIGN=RIGHT>2,298,885</TD><TD ALIGN=RIGHT>589,547</TD><TD ALIGN=RIGHT>582,843</TD><TD ALIGN=RIGHT>6,704</TD><TD ALIGN=RIGHT>% 1.14</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC12</A></TH><TD ALIGN=RIGHT>1,120,939</TD><TD ALIGN=RIGHT>2,169,280</TD><TD ALIGN=RIGHT>778,216</TD><TD ALIGN=RIGHT>771,827</TD><TD ALIGN=RIGHT>6,389</TD><TD ALIGN=RIGHT>0.82</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC7</A></TH><TD ALIGN=RIGHT>1,116,966</TD><TD ALIGN=RIGHT>2,152,975</TD><TD ALIGN=RIGHT>650,329</TD><TD ALIGN=RIGHT>644,071</TD><TD ALIGN=RIGHT>6,258</TD><TD ALIGN=RIGHT>0.96</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC9</A></TH><TD ALIGN=RIGHT>1,065,503</TD><TD ALIGN=RIGHT>2,084,892</TD><TD ALIGN=RIGHT>757,644</TD><TD ALIGN=RIGHT>750,648</TD><TD ALIGN=RIGHT>6,996</TD><TD ALIGN=RIGHT>0.92</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC10</A></TH><TD ALIGN=RIGHT>1,062,082</TD><TD ALIGN=RIGHT>2,121,489</TD><TD ALIGN=RIGHT>788,344</TD><TD ALIGN=RIGHT>781,331</TD><TD ALIGN=RIGHT>7,013</TD><TD ALIGN=RIGHT>0.89</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC14</A></TH><TD ALIGN=RIGHT>1,042,929</TD><TD ALIGN=RIGHT>2,089,193</TD><TD ALIGN=RIGHT>846,055</TD><TD ALIGN=RIGHT>839,126</TD><TD ALIGN=RIGHT>6,929</TD><TD ALIGN=RIGHT>0.82</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC13</A></TH><TD ALIGN=RIGHT>1,009,643</TD><TD ALIGN=RIGHT>2,057,345</TD><TD ALIGN=RIGHT>811,829</TD><TD ALIGN=RIGHT>803,589</TD><TD ALIGN=RIGHT>8,240</TD><TD ALIGN=RIGHT>1.01</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC11</A></TH><TD ALIGN=RIGHT>998,880</TD><TD ALIGN=RIGHT>1,966,644</TD><TD ALIGN=RIGHT>730,565</TD><TD ALIGN=RIGHT>724,864</TD><TD ALIGN=RIGHT>5,701</TD><TD ALIGN=RIGHT>0.78</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC23</A></TH><TD ALIGN=RIGHT>942,133</TD><TD ALIGN=RIGHT>1,535,766</TD><TD ALIGN=RIGHT>437,098</TD><TD ALIGN=RIGHT>433,896</TD><TD ALIGN=RIGHT>3,202</TD><TD ALIGN=RIGHT>0.73</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC16</A></TH><TD ALIGN=RIGHT>907,948</TD><TD ALIGN=RIGHT>1,534,288</TD><TD ALIGN=RIGHT>452,316</TD><TD ALIGN=RIGHT>449,101</TD><TD ALIGN=RIGHT>3,215</TD><TD ALIGN=RIGHT>0.71</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC24</A></TH><TD ALIGN=RIGHT>835,600</TD><TD ALIGN=RIGHT>1,383,475</TD><TD ALIGN=RIGHT>399,056</TD><TD ALIGN=RIGHT>395,776</TD><TD ALIGN=RIGHT>3,280</TD><TD ALIGN=RIGHT>0.82</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC27</A></TH><TD ALIGN=RIGHT>768,336</TD><TD ALIGN=RIGHT>1,229,804</TD><TD ALIGN=RIGHT>334,232</TD><TD ALIGN=RIGHT>331,822</TD><TD ALIGN=RIGHT>2,410</TD><TD ALIGN=RIGHT>0.72</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC18</A></TH><TD ALIGN=RIGHT>743,640</TD><TD ALIGN=RIGHT>1,204,811</TD><TD ALIGN=RIGHT>325,150</TD><TD ALIGN=RIGHT>322,904</TD><TD ALIGN=RIGHT>2,246</TD><TD ALIGN=RIGHT>0.69</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">COR2A</A></TH><TD ALIGN=RIGHT>723,569</TD><TD ALIGN=RIGHT>1,441,881</TD><TD ALIGN=RIGHT>583,327</TD><TD ALIGN=RIGHT>578,578</TD><TD ALIGN=RIGHT>4,749</TD><TD ALIGN=RIGHT>0.81</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC22</A></TH><TD ALIGN=RIGHT>519,274</TD><TD ALIGN=RIGHT>780,151</TD><TD ALIGN=RIGHT>189,988</TD><TD ALIGN=RIGHT>188,743</TD><TD ALIGN=RIGHT>1,245</TD><TD ALIGN=RIGHT>0.66</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC21</A></TH><TD ALIGN=RIGHT>436,930</TD><TD ALIGN=RIGHT>680,160</TD><TD ALIGN=RIGHT>182,214</TD><TD ALIGN=RIGHT>180,973</TD><TD ALIGN=RIGHT>1,241</TD><TD ALIGN=RIGHT>0.68</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">RP11</A></TH><TD ALIGN=RIGHT>292,975</TD><TD ALIGN=RIGHT>394,813</TD><TD ALIGN=RIGHT>86,875</TD><TD ALIGN=RIGHT>85,903</TD><TD ALIGN=RIGHT>972</TD><TD ALIGN=RIGHT>1.12</TD></TR> -<TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET-"_blank">COR02</A></TH><TD ALIGN=RIGHT>272,396</TD><TD ALIGN=RIGHT>546,984</TD><TD ALIGN=RIGHT>208,377</TD><TD ALIGN=RIGHT>206,782</TD><TD ALIGN=RIGHT>1,595</TD><TD ALIGN=RIGHT>0.77</TD></TR> +<TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">COR02</A></TH><TD ALIGN=RIGHT>272,396</TD><TD ALIGN=RIGHT>546,984</TD><TD ALIGN=RIGHT>208,377</TD><TD ALIGN=RIGHT>206,782</TD><TD ALIGN=RIGHT>1,595</TD><TD ALIGN=RIGHT>0.77</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">CTD</A></TH><TD ALIGN=RIGHT>226,848</TD><TD ALIGN=RIGHT>403,688</TD><TD ALIGN=RIGHT>96,594</TD><TD ALIGN=RIGHT>94,941</TD><TD ALIGN=RIGHT>1,653</TD><TD ALIGN=RIGHT>1.71</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">CH17</A></TH><TD ALIGN=RIGHT>176,209</TD><TD ALIGN=RIGHT>325,659</TD><TD ALIGN=RIGHT>105,805</TD><TD ALIGN=RIGHT>105,060</TD><TD ALIGN=RIGHT>745</TD><TD ALIGN=RIGHT>0.70</TD></TR> <TR><TH ALIGN=LEFT><A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET="_blank">ABC20</A></TH><TD ALIGN=RIGHT>49,132</TD><TD ALIGN=RIGHT>80,350</TD><TD ALIGN=RIGHT>24,720</TD><TD ALIGN=RIGHT>24,474</TD><TD ALIGN=RIGHT>246</TD><TD ALIGN=RIGHT>1.00</TD></TR> <TR><TH ALIGN=LEFT>UCSC<BR>dropped</TH><TD ALIGN=RIGHT>152,979</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD></TR> <TR><TH ALIGN=LEFT>multiple<BR>mappings</TH><TD ALIGN=RIGHT>775,629</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD><TD ALIGN=RIGHT>n/a</TD></TR> </TABLE> </P> <H2>Credits</H2> <P> Additional information about the clone, including how it can be obtained, may be found at the <A HREF="https://ncbiinsights.ncbi.nlm.nih.gov/2019/05/01/clone-db-retirement/" TARGET=_blank>NCBI Clone Registry</A>. To view the registry entry for a specific clone, open the details page for the clone and click on its name at