cea47d47e8b2d70f5655d5947669e15d59c079d6
max
  Thu Apr 30 02:59:15 2026 -0700
committing dbVar nr track, keeping it only on dev, may be useful one day when looking at a CNV and for comparing against the new normal dbVar track

diff --git src/hg/makeDb/trackDb/human/trackDb.dbVar.ra src/hg/makeDb/trackDb/human/trackDb.dbVar.ra
index c423fbe9595..8dded823d07 100644
--- src/hg/makeDb/trackDb/human/trackDb.dbVar.ra
+++ src/hg/makeDb/trackDb/human/trackDb.dbVar.ra
@@ -91,30 +91,70 @@
     filterValues.overlap 10 to 25,25 to 50,50 to 75,75 to 90,90 to 100
     filterLabel.type Variant Type
     filterValues.type alu deletion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,line1 deletion,sva deletion
     filterLabel.length Variant Length
     filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB
 
         track dbVar_conflict_pathogenic
         parent dbVar_conflict on
         shortLabel dbVar Curated Conflict SVs
         longLabel NCBI dbVar Curated Common SVs: Conflicts with Pathogenic
         bigDataUrl /gbdb/$D/bbi/dbVar/conflict_pathogenic.bb
         type bigBed 9 + .
         url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$
         urlLabel NCBI Variant Page:
 
+    track dbVarNr
+    superTrack dbVarSv pack
+    shortLabel dbVar NR all SV ALPHA
+    longLabel dbVar Non-redundant Structural Variants (DEL+DUP+INS merged, 4.6M) - ALPHA only
+    type bigBed 9 +
+    itemRgb on
+    release alpha
+    visibility hide
+    html dbVarNr
+    bigDataUrl /gbdb/$D/bbi/dbVar/nr.bb
+    searchIndex name
+    mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen $binSize, count=$variantCount subsets=$subsets study=$study
+    filterValues.svType DEL|DEL (Deletion),DUP|DUP (Duplication),INS|INS (Insertion)
+    filterType.svType multipleListOr
+    filterLabel.svType SV Type
+    filter.svLen 0:248886400
+    filterByRange.svLen on
+    filterLabel.svLen SV Length on reference (bp)
+    filter.insLen 0:21714506
+    filterByRange.insLen on
+    filterLabel.insLen Insertion sequence length (bp; INS only)
+    filterValues.binSize small,medium,large
+    filterType.binSize multipleListOr
+    filterLabel.binSize Bin size (small <50bp, medium <1Mb, large >=1Mb)
+    filterValues.subsets common|in common subset,pathogenic|in pathogenic subset,somatic|in somatic subset
+    filterType.subsets multipleListOr
+    filterLabel.subsets Subset membership
+    filterValuesDefault.subsets common,pathogenic,somatic
+    filter.variantCount 1:10000
+    filterByRange.variantCount on
+    filterLabel.variantCount Merged subvariants (number of submitted SVs at this exact placement)
+    url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$
+    urlLabel NCBI Variant Page:
+    skipEmptyFields on
+
+searchTable dbVarNr
+searchMethod exact
+searchType bigBed
+termRegex ^[ne]ssv[0-9]+
+
 searchTable dbVar_common_gnomad
 searchMethod exact
 searchType bigBed
 termRegex ^[ne]ssv[0-9]+
 
 searchTable dbVar_common_1000g
 searchMethod exact
 searchType bigBed
 termRegex ^[ne]ssv[0-9]+
 
 searchTable dbVar_common_decipher
 searchMethod exact
 searchType bigBed
 termRegex ^[ne]ssv[0-9]+