7dae59171ebf9d462438202cc85ae434e8080fe8
max
  Tue Apr 28 06:30:43 2026 -0700
NMD Escape MANE: dedicated .as for cleaner labelFields dropdown. refs #33737

The MANE bigBed now ships with its own autoSql, so the labelFields
dropdown in the track config shows "Gene Symbol", "Gencode Accession
(ENST)" and "RefSeq Accession (NM_/NR_)" - the descriptions QA asked
for. The shared nmdEscCollapsed.as keeps its generic wording for the
Gencode and RefSeq subtracks, where the "transcripts" column holds
different accession families and a single hard-coded label would not
fit both.

diff --git src/hg/makeDb/scripts/nmd/nmdEscManeCollapsed.as src/hg/makeDb/scripts/nmd/nmdEscManeCollapsed.as
new file mode 100644
index 00000000000..54ddd2129fa
--- /dev/null
+++ src/hg/makeDb/scripts/nmd/nmdEscManeCollapsed.as
@@ -0,0 +1,16 @@
+table nmdEscManeCollapsed
+"NMD escape regions for MANE Select Plus Clinical (one row per transcript)"
+    (
+    string chrom;      "Chromosome (or contig, scaffold, etc.)"
+    uint   chromStart; "Start position in chromosome"
+    uint   chromEnd;   "End position in chromosome"
+    string name;       "Gene Symbol"
+    uint   score;      "Score from 0-1000"
+    char[1] strand;    "+ or -"
+    uint thickStart;   "Start of where display should be thick"
+    uint thickEnd;     "End of where display should be thick"
+    uint color;        "RGB color: red=rule 1, orange=rule 2, dark red=rule 3, gold=rule 4"
+    string mouseover;  "Rule description and transcript count"
+    lstring transcripts; "Gencode Accession (ENST)"
+    lstring ncbiIds;   "RefSeq Accession (NM_/NR_)"
+    )