Commits for angie

v499_preview2 to v499_base (2026-05-25 to 2026-06-01) v499

c385c1661b72541e1e8fb28187323f3b31c431e7 Fri May 29 18:24:49 2026 -0700

• If new columns are present in ripples server output then use them to draw RIVET-like recombination diagram in pop-up.
  • src/hg/hgPhyloPlace/debugRecombinantDisplay.c - lines changed 93, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/hgPhyloPlace.c - lines changed 21, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 136, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/phyloPlace.h - lines changed 6, context: html, text, full: html, text
  • src/hg/hgPhyloPlace/runUsher.c - lines changed 30, context: html, text, full: html, text
  • src/hg/js/hgPhyloPlace.js - lines changed 697, context: html, text, full: html, text
  • src/hg/js/makefile - lines changed 1, context: html, text, full: html, text

fc877f32c3c4a79095cdfc916bf463bd25948ef9 Sat May 30 08:35:31 2026 -0700

• Fixing SVG-saving bug and minor issues found by Claude review.
  • src/hg/js/hgPhyloPlace.js - lines changed 4, context: html, text, full: html, text