19c16827a214d3384ae7e6052355dbbc8bc7de46
jbirgmei
  Fri May 29 00:42:09 2026 -0700
Varaico release 3 (20260527): bump dataVersion to release 3, update makeDoc. refs #37658

diff --git src/hg/makeDb/doc/hg38/varaico.txt src/hg/makeDb/doc/hg38/varaico.txt
index 1e2db4b60af..49e068c2cfc 100644
--- src/hg/makeDb/doc/hg38/varaico.txt
+++ src/hg/makeDb/doc/hg38/varaico.txt
@@ -1,17 +1,18 @@
 # May 21 2025 - Johannes
 # have a look at this config file and edit paths/API keys if necessary:
 export AMELIE2_CONFIG_JSON=/hive/users/jbirgmei/amelie2/src/scripts/config.json
 
 # then run the pipeline to create hg19 and hg38 bigbeds:
 /cluster/home/jbirgmei/opt_rocky9/miniconda3/envs/amelie2/bin/amelie2 workflow final_out --partition hg19,hg38
 
 # move bigbeds to track version directory:
-mv /hive/users/jbirgmei/amelie2/data/out/None/full/hg*/*.bb /hive/users/jbirgmei/TRACK_VERSIONS/v4_20251110
+mkdir /hive/users/jbirgmei/TRACK_VERSIONS/v5_20260527
+cp -r /hive/users/jbirgmei/amelie2/data/out/None/full/hg* /hive/users/jbirgmei/TRACK_VERSIONS/v5_20260527
 
 # copy bigbeds:
-cp /hive/users/jbirgmei/TRACK_VERSIONS/v4_20251110/varaico.hg19.bb /hive/data/genomes/hg19/bed/varaico/varaico.bb
-cp /hive/users/jbirgmei/TRACK_VERSIONS/v4_20251110/varaico.hg38.bb /hive/data/genomes/hg38/bed/varaico/varaico.bb
-cp /hive/users/jbirgmei/TRACK_VERSIONS/v4_20251110/varaicoSuppl.hg19.bb /hive/data/genomes/hg19/bed/varaico/varaicoSuppl.bb
-cp /hive/users/jbirgmei/TRACK_VERSIONS/v4_20251110/varaicoSuppl.hg38.bb /hive/data/genomes/hg38/bed/varaico/varaicoSuppl.bb
+cp /hive/users/jbirgmei/TRACK_VERSIONS/v5_20260527/hg19/normalized_variants.hg19.bb /hive/data/genomes/hg19/bed/varaico/varaico.bb
+cp /hive/users/jbirgmei/TRACK_VERSIONS/v5_20260527/hg38/normalized_variants.hg38.bb /hive/data/genomes/hg38/bed/varaico/varaico.bb
+cp /hive/users/jbirgmei/TRACK_VERSIONS/v5_20260527/hg19/normalized_variants_supplements.hg19.bb /hive/data/genomes/hg19/bed/varaico/varaicoSuppl.bb
+cp /hive/users/jbirgmei/TRACK_VERSIONS/v5_20260527/hg38/normalized_variants_supplements.hg38.bb /hive/data/genomes/hg38/bed/varaico/varaicoSuppl.bb
 
 # finally, create symlinks from /gbdb/$D/bbi/varaico{Suppl,}.bb to /hive/data/genomes/$D/bed/varaico/varaico{Suppl,}.bb