bafa5b1fa3546c23f9091e08304355490ded9ead
lrnassar
  Tue May 26 11:34:39 2026 -0700
Address CR feedback on v498 description pages. refs #37533

varFreqs.html: fix contact-us sentence punctuation/grammar, replace
"ships" with "provides"/"includes" in two spots, and rewrite the
"trackUI labels" sentence to refer to the track configuration page and
the combined-track bigBed (per Gerardo's question about what trackUI
labels meant).
clinPred.html: replace em-dashes around "those that do not change the
encoded amino acid" with commas.
predictionScoresSuper.html: reorder references alphabetically by first
author.

diff --git src/hg/makeDb/trackDb/human/clinPred.html src/hg/makeDb/trackDb/human/clinPred.html
index 1748d7654b5..c24f8529d37 100644
--- src/hg/makeDb/trackDb/human/clinPred.html
+++ src/hg/makeDb/trackDb/human/clinPred.html
@@ -12,32 +12,32 @@
 
 <p>
 Scores range from 0 to 1, with higher values indicating greater predicted
 likelihood that a variant is disease-relevant. The authors recommend a score of
 &ge; 0.5 as evidence of pathogenicity. As with any pathogenicity prediction
 score, ClinPred is intended as supporting evidence rather than a stand-alone
 classifier.
 </p>
 
 <h2>Display Conventions and Configuration</h2>
 
 <p>
 There are four subtracks in this collection, one for each possible alternate
 nucleotide. At every exome position covered by ClinPred, three of the four
 subtracks show a score (one per non-reference base) and the fourth, corresponding
-to the reference base, is set to 0. Synonymous alternates &mdash; those that do
-not change the encoded amino acid &mdash; are also set to 0, since ClinPred only
+to the reference base, is set to 0. Synonymous alternates, those that do
+not change the encoded amino acid, are also set to 0, since ClinPred only
 scores missense variants. Positions with no exome coverage are shown as gaps.
 </p>
 
 <p>
 When using this track, zoom in until you can see every basepair at the top of
 the display. Otherwise, several nucleotides fall under each pixel and no score
 will be shown on the mouseover tooltip.
 </p>
 
 <p><b>Track colors</b></p>
 
 <p>
 Each subtrack is colored by score using the threshold recommended by the
 ClinPred authors:
 </p>