27ee572078dffcf6fd2a96148ebaf2ff68b43c85
lrnassar
  Fri May 29 08:19:44 2026 -0700
varFreqs: flip 5 recently-added subtracks (wbbc, chinamap, tpmi, ukbb,
genomeindia) from dense to hide to match the rest of the supertrack -- only
varFreqsAll renders by default when the supertrack is enabled. refs #36642

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index 1c43df781e0..84165b0e516 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -380,82 +380,82 @@
         shortLabel Japan ToMMo 61k WGS
         longLabel Variant Frequencies: Japan 61k - ToMMo SNV+Indels
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/tommo61kjpn/tommo-61kjpn-20250616-GRCh38-snvindel-af-autosome.vcf.gz
         visibility hide
         dataVersion 2025-06-16
         priority 5
 
         track wbbc
         shortLabel China WBBC 4.5k WGS
         longLabel Variant Frequencies: Westlake BioBank for Chinese - 4,480 WGS, 4 regional Han groups
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/wbbc/wbbc.vcf.gz
-        visibility dense
+        visibility hide
         dataVersion Phase I v20210103
         priority 5.5
 
         track chinamap
         shortLabel China ChinaMAP 10.5k WGS
         longLabel Variant Frequencies: ChinaMAP phase 1 - 10,588 WGS at ~40x, Chinese natural population
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_chinamap/chinamap.vcf.gz
-        visibility dense
+        visibility hide
         dataVersion Phase 1 (v2020-03.beta)
         priority 5.55
         tableBrowser off
 
         track tpmi
         shortLabel Taiwan TPMI Axiom array
         longLabel Variant Frequencies: Taiwan Precision Medicine Initiative - Axiom TPM1 chip, Han Chinese
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_tpmi/tpmi.vcf.gz
-        visibility dense
+        visibility hide
         dataVersion Axiom TPM1 2022-06
         priority 5.6
         tableBrowser off
 
         track alfaVcf
         shortLabel NCBI ALFA 408k mixed
         longLabel Variant Frequencies: NCBI ALFA (dbGaP data) - 408k mixed WGS/WES/array, 163M variants
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA.vcf.gz
         visibility hide
         dataVersion R4
         priority 4.1
         url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
         urlLabel NCBI Variation Page
 
         track finngen
         parent varFreqs on
         visibility hide
         type vcfTabix
         shortLabel FinnGen R12 500k imputed
         longLabel Variant Frequencies: Finland FinnGen - 500k samples, arrays, imputation used 8.5k WGS
         priority 4.5
         bigDataUrl /gbdb/$D/varFreqs/_finngen/finnge_R12_annotated_variants_v1.vcf.gz
         dataVersion R12
         tableBrowser off
 
         track ukbb
         parent varFreqs on
-        visibility dense
+        visibility hide
         type vcfTabix
         shortLabel UK Biobank 361k imputed
         longLabel Variant Frequencies: UK Biobank Genotypes - 361k White British, Neale Lab Round 2 imputed
         priority 4.6
         bigDataUrl /gbdb/$D/varFreqs/ukbb/ukbb.vcf.gz
         dataVersion Neale Lab R2 08-2018
 
         track swefreq
         parent varFreqs on
         visibility hide
         type vcfTabix
         shortLabel Sweden SweGen 1k WGS
         longLabel Variant Frequencies: Sweden SweGen - 1k WGS
         priority 4.7
         bigDataUrl /gbdb/$D/varFreqs/_swefreq/swegen_frequencies_fixploidy_GRCh38_20190204.vcf.gz
@@ -514,31 +514,31 @@
         track indigenomes
         shortLabel India IndiGenomes 1k WGS
         longLabel Variant Frequencies: IndiGenomes India - 1,029 samples
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/indigenomes/IndiGenomes_Variants.vcf.gz
         visibility hide
         dataVersion IndiGen pilot (Jain 2021)
 
         track genomeindia
         shortLabel India GenomeIndia 9.7k WGS
         longLabel Variant Frequencies: GenomeIndia - 9,768 WGS, 83 populations (Bhattacharyya 2025)
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_genomeindia/genomeindia.vcf.gz
-        visibility dense
+        visibility hide
         dataVersion 9768GI_SummaryStats (Apr 2025)
         priority 4.8
 
         track kova
         shortLabel Korea KOVA 5.3k mixed
         longLabel Variant Frequencies: KOVA Korea - 5305 samples, 1.9k WGS+3.4k WES
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_kova/kova.v7.vcf.gz
         visibility hide
         tableBrowser off
         dataVersion V7
 
         track npm
         shortLabel Singapore NPM 9.7k WGS