6b0d68657267f1e02c47d4224ea62446bbbb2ba0 max Fri May 22 06:55:52 2026 -0700 small non-AI changes to the html docs pages of the long-read SV tracks diff --git src/hg/makeDb/trackDb/human/hgsvc2Sv.html src/hg/makeDb/trackDb/human/hgsvc2Sv.html index 994ff8c8441..2ebfa167a61 100644 --- src/hg/makeDb/trackDb/human/hgsvc2Sv.html +++ src/hg/makeDb/trackDb/human/hgsvc2Sv.html @@ -1,25 +1,24 @@ <h2>Description</h2> <p> This track shows structural variants (SVs) from the second phase of the Human Genome Structural Variation Consortium (HGSVC2). The callset is derived from 32 haplotype-resolved diploid genomes (64 phased haplotypes) spanning five 1000 Genomes superpopulations (African, Admixed American, East Asian, European, South Asian). Each genome was sequenced with PacBio long reads (continuous long-read and HiFi) and phased with -Strand-seq, enabling comprehensive characterization of SVs that short-read -approaches miss. +Strand-seq. </p> <p> The track merges the two SV annotation tables from the HGSVC2 v2.0 integrated callset freeze 4: 111,330 insertions/deletions and 416 inversions, for a total of 111,746 SVs. Each row is a site-level variant with per-site allele count, carrier haplotypes, population-scale allele frequencies (imputed from the phased callset back into 1000 Genomes, insertions and deletions only) and structural annotations. </p> <h2>Display Conventions and Configuration</h2> <p> Items are colored by SV type: <ul> <li><span style="color: rgb(200,0,0);">Deletions (DEL)</span> - red</li>