6b0d68657267f1e02c47d4224ea62446bbbb2ba0 max Fri May 22 06:55:52 2026 -0700 small non-AI changes to the html docs pages of the long-read SV tracks diff --git src/hg/makeDb/trackDb/human/hgsvc3Sv.html src/hg/makeDb/trackDb/human/hgsvc3Sv.html index f262fc2bbfe..302fe0146f5 100644 --- src/hg/makeDb/trackDb/human/hgsvc3Sv.html +++ src/hg/makeDb/trackDb/human/hgsvc3Sv.html @@ -9,31 +9,31 @@ with PAV v2.4.0.1 and cross-validated by ten additional orthogonal callers. </p> <p> The track merges the two final SV annotation tables from the HGSVC3 v1.0 release on GRCh38: 176,232 insertions/deletions and 300 inversions, for a total of 176,532 SVs. Each row is a site-level variant with the list of carrier haplotypes and additional structural annotations. </p> <p> The same track is also available natively on the T2T-CHM13 (hs1) assembly: HGSVC3 independently aligned all haplotype-resolved assemblies to both GRCh38 and T2T-CHM13 and released a separate set of annotation tables per reference. The hs1 track is built directly from the <a href="https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC3/release/Variant_Calls/1.0/T2T-CHM13/annotation_table/" target="_blank"> HGSVC3 T2T-CHM13 annotation tables</a> (188,224 DEL+INS and 276 INV; -188,500 SVs total) — no liftOver is involved. +188,500 SVs total); no liftOver is involved. </p> <h2>Display Conventions and Configuration</h2> <p> Items are colored by SV type: <ul> <li><span style="color: rgb(200,0,0);">Deletions (DEL)</span> - red</li> <li><span style="color: rgb(0,0,200);">Insertions (INS)</span> - blue</li> <li><span style="color: rgb(230,140,0);">Inversions (INV)</span> - orange</li> </ul> </p> <p> Insertions are placed at the insertion site with a width of 1 bp; deletions and inversions span the affected reference interval. Filters are available for SV type, SV length, carrier-haplotype count, distinct sample count,