6b0d68657267f1e02c47d4224ea62446bbbb2ba0
max
Fri May 22 06:55:52 2026 -0700
small non-AI changes to the html docs pages of the long-read SV tracks
diff --git src/hg/makeDb/trackDb/human/mei.html src/hg/makeDb/trackDb/human/mei.html
index 937ff3d0c63..1f8ba13ecb9 100644
--- src/hg/makeDb/trackDb/human/mei.html
+++ src/hg/makeDb/trackDb/human/mei.html
@@ -17,30 +17,42 @@
Tracks in this collection report MEI calls assembled from long-read
genome sequencing. Items are colored by element class.
Available subtracks
- HGSVC3 65 MEIs -
mobile element insertions identified in 65 diverse long-read
assembled samples relative to the reference assembly
(HGSVC3, Logsdon et al. 2025, Nature). Available on
both GRCh38/hg38 (12,642 MEIs) and T2T-CHM13/hs1 (12,919 MEIs).
- DeepMEI 1000G MEIs -
91,617 mobile element insertions called by the DeepMEI
convolutional neural network on the 3,202 high-coverage 1000
Genomes samples (Xu et al. 2023, bioRxiv). hg38 only.
+ - HMEID 5675 MEIs -
+ 36,699 mobile element insertions called by MELT on 5,675 samples
+ from the NyuWa Chinese cohort and the 1000 Genomes Project,
+ with per-cohort and per-super-population allele frequencies
+ (Niu et al. 2022, Nucleic Acids Res). hg38 only.
+ - SweGen 1000 MEIs -
+ 18,090 mobile element insertions called by MELT v2.0.2 on the
+ 1,000 SweGen Swedish whole-genome samples (Ameur et al. 2017,
+ Eur J Hum Genet), lifted from GRCh37 to hg38. The
+ short-variant frequencies for the same cohort are in the
+ SweGen subtrack of
+ Variant Frequencies.
Related: Long-read Structural Variants
contains the parent SV callsets from which several of these MEI tracks
are derived. RepeatMasker shows
all annotated mobile elements in the reference genome (regardless of
whether they are polymorphic).
Display Conventions and Configuration
Each MEI is shown as a 1-bp anchor block at the position where the
insertion attaches to the reference. Items are colored by element class: