6b0d68657267f1e02c47d4224ea62446bbbb2ba0 max Fri May 22 06:55:52 2026 -0700 small non-AI changes to the html docs pages of the long-read SV tracks diff --git src/hg/makeDb/trackDb/human/meiDeepmei1kg.html src/hg/makeDb/trackDb/human/meiDeepmei1kg.html index 49e826c3f85..eb4171495cc 100644 --- src/hg/makeDb/trackDb/human/meiDeepmei1kg.html +++ src/hg/makeDb/trackDb/human/meiDeepmei1kg.html @@ -24,31 +24,31 @@ allele number and allele frequency across the 3,202 samples, the number of carrier samples, and the list of carrier sample IDs.

Display Conventions and Configuration

An insertion has zero length on the reference: it attaches between two adjacent reference bases without replacing any of them. Following the VCF convention used by DeepMEI and by the other long-read SV and MEI tracks, each MEI is drawn as a 1-bp block sitting on the anchor base — the reference base immediately to the left of the insertion attachment point. The inserted mobile element itself is not present in the reference and is therefore not drawn; the source VCF uses a symbolic ALT (e.g. <INS:ME:ALU>) and does not report the inserted sequence or its exact length, so neither is shown -on this track. The item label is INS-class-carrierCount. +on this track. The item label is class-carrierCount.

Items are colored by element class:

The score column encodes the alt-allele frequency on a 0-1000 scale. Filters allow restricting to specific element classes, allele frequency and carrier counts.