6b0d68657267f1e02c47d4224ea62446bbbb2ba0 max Fri May 22 06:55:52 2026 -0700 small non-AI changes to the html docs pages of the long-read SV tracks diff --git src/hg/makeDb/trackDb/human/meiDeepmei1kg.html src/hg/makeDb/trackDb/human/meiDeepmei1kg.html index 49e826c3f85..eb4171495cc 100644 --- src/hg/makeDb/trackDb/human/meiDeepmei1kg.html +++ src/hg/makeDb/trackDb/human/meiDeepmei1kg.html @@ -24,31 +24,31 @@ allele number and allele frequency across the 3,202 samples, the number of carrier samples, and the list of carrier sample IDs. </p> <h2>Display Conventions and Configuration</h2> <p> An insertion has zero length on the reference: it attaches between two adjacent reference bases without replacing any of them. Following the VCF convention used by DeepMEI and by the other long-read SV and MEI tracks, each MEI is drawn as a <b>1-bp block sitting on the anchor base</b> — the reference base immediately to the left of the insertion attachment point. The inserted mobile element itself is not present in the reference and is therefore not drawn; the source VCF uses a symbolic ALT (e.g. <tt><INS:ME:ALU></tt>) and does not report the inserted sequence or its exact length, so neither is shown -on this track. The item label is <tt>INS-class-carrierCount</tt>. +on this track. The item label is <tt>class-carrierCount</tt>. </p> <p> Items are colored by element class: </p> <ul> <li><span style="display:inline-block;background-color:#0072B2;width:18px;height:12px;vertical-align:middle;"></span> <b>Alu</b> — SINE (Short INterspersed Element)</li> <li><span style="display:inline-block;background-color:#D55E00;width:18px;height:12px;vertical-align:middle;"></span> <b>L1</b> — LINE-1 (Long INterspersed Element-1)</li> <li><span style="display:inline-block;background-color:#009E73;width:18px;height:12px;vertical-align:middle;"></span> <b>SVA</b> (SINE-VNTR-Alu) — composite retrotransposon</li> </ul> <p> The score column encodes the alt-allele frequency on a 0-1000 scale. Filters allow restricting to specific element classes, allele frequency and carrier counts. </p>