630eb30bc3695afcf73a19be6e3bc9a2829b365f chmalee Wed May 13 13:04:37 2026 -0700 Make myVariants items bed12+ rather than bed9+, refs #33808 diff --git src/hg/lib/myVariants.sql src/hg/lib/myVariants.sql index a3c1d34e263..57406da1752 100644 --- src/hg/lib/myVariants.sql +++ src/hg/lib/myVariants.sql @@ -1,25 +1,28 @@ # An item in a myVariants type track. CREATE TABLE myVariants ( bin int unsigned not null, # Bin for range index chrom varchar(255) not null, # Reference sequence chromosome or scaffold chromStart int unsigned not null, # Start position in chromosome chromEnd int unsigned not null, # End position in chromosome name varchar(255) not null, # Name of item - up to 16 chars score int unsigned not null, # 0-1000. Higher numbers are darker. strand char(1) not null, # + or - for strand thickStart int unsigned not null, # Start of thick part thickEnd int unsigned not null, # End position of thick part itemRgb int unsigned not null, # RGB 8 bits each as in bed + blockCount int unsigned not null, # Number of blocks + blockSizes longblob not null, # Comma separated list of block sizes + chromStarts longblob not null, # Start positions relative to chromStart description longblob not null, # Longer item description db varchar(255) not null, # database name of this annotation ref varchar(255) not null, # reference allele alt varchar(255) not null, # alternate allele project varchar(255) not null, # project name for grouping variants mouseover varchar(255) not null, # short mouseover text for hover display id int auto_increment, # Unique ID for item #Indices PRIMARY KEY(id), INDEX(chrom(16),bin), INDEX(db), INDEX(project) ) ENGINE=InnoDB;