1fc1fed014272d6781d8f98845efae537e808e58
markd
  Sat May 16 20:07:30 2026 -0700
added option to get attribute output from gtfToGenePred in TSV format

diff --git src/hg/utils/gtfToGenePred/tests/makefile src/hg/utils/gtfToGenePred/tests/makefile
index 7f49a48cecb..f2f123ef14a 100644
--- src/hg/utils/gtfToGenePred/tests/makefile
+++ src/hg/utils/gtfToGenePred/tests/makefile
@@ -19,31 +19,31 @@
 
 # source prefix filtering
 srcPre: mkdirs
 	${gtfToGenePred} -infoOut=output/$@.info -sourcePrefix=mgc2 -sourcePrefix=mgc3 input/basic.gtf output/$@.gp
 	${genePredCheck} -verbose=0 output/$@.gp
 	diff expected/$@.gp output/$@.gp
 	diff expected/$@.info output/$@.info
 
 # error reporting
 dups: mkdirs
 	if ${gtfToGenePred} -allErrors input/dups.gtf output/$@.gp >output/$@.out 2>&1 ; then false ; else true ; fi
 	diff expected/$@.out output/$@.out
 	diff expected/$@.gp output/$@.gp
 
 impliedStop: mkdirs
-	${gtfToGenePred} -impliedStopAfterCds -infoOut=output/$@.info input/flybase.gtf output/$@.gp
+	${gtfToGenePred} -impliedStopAfterCds -infoTsv=output/$@.info input/flybase.gtf output/$@.gp
 	${genePredCheck} -verbose=0 output/$@.gp
 	diff expected/$@.gp output/$@.gp
 	diff expected/$@.info output/$@.info
 
 # protein id, make sure -inclVersion does nothing for this file
 ensembl: mkdirs
 	${gtfToGenePred} -genePredExt -infoOut=output/$@.info -includeVersion input/ensembl.gtf output/$@.gp
 	${genePredCheck} -verbose=0 output/$@.gp
 	diff expected/$@.gp output/$@.gp
 	diff expected/$@.info output/$@.info
 
 # -geneNameAsName2, make sure -inclVersion does nothing for this file
 geneNameAsName2: mkdirs
 	${gtfToGenePred} -genePredExt -geneNameAsName2 -includeVersion input/ensembl.gtf output/$@.gp
 	${genePredCheck} -verbose=0 output/$@.gp