7df6e18265341f87a69fba808aa1f92f8ebca841
markd
  Wed Apr 15 13:39:42 2026 -0700
move copy of htslib

diff --git src/htslib/cram/cram_stats.h src/htslib/cram/cram_stats.h
deleted file mode 100644
index b471e68a0ca..00000000000
--- src/htslib/cram/cram_stats.h
+++ /dev/null
@@ -1,59 +0,0 @@
-/*
-Copyright (c) 2012-2013 Genome Research Ltd.
-Author: James Bonfield <jkb@sanger.ac.uk>
-
-Redistribution and use in source and binary forms, with or without 
-modification, are permitted provided that the following conditions are met:
-
-   1. Redistributions of source code must retain the above copyright notice, 
-this list of conditions and the following disclaimer.
-
-   2. Redistributions in binary form must reproduce the above copyright notice, 
-this list of conditions and the following disclaimer in the documentation 
-and/or other materials provided with the distribution.
-
-   3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
-Institute nor the names of its contributors may be used to endorse or promote
-products derived from this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND 
-ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
-WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 
-DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-*/
-
-#ifndef _CRAM_STATS_H_
-#define _CRAM_STATS_H_
-
-#ifdef __cplusplus
-extern "C" {
-#endif
-
-cram_stats *cram_stats_create(void);
-void cram_stats_add(cram_stats *st, int32_t val);
-void cram_stats_del(cram_stats *st, int32_t val);
-void cram_stats_dump(cram_stats *st);
-void cram_stats_free(cram_stats *st);
-
-/*
- * Computes entropy from integer frequencies for various encoding methods and
- * picks the best encoding.
- *
- * FIXME: we could reuse some of the code here for the actual encoding
- * parameters too. Eg the best 'k' for SUBEXP or the code lengths for huffman.
- *
- * Returns the best codec to use.
- */
-enum cram_encoding cram_stats_encoding(cram_fd *fd, cram_stats *st);
-
-#ifdef __cplusplus
-}
-#endif
-
-#endif