22c3e40ac360c345ab79f6bd3a51dbde33b2b4cd
markd
  Tue May 12 14:25:49 2026 -0700
move submoduleSet to submodule dir

diff --git src/makefile src/makefile
index 6c322335114..55e4e73ccac 100644
--- src/makefile
+++ src/makefile
@@ -15,31 +15,31 @@
 	${MAKE} clean
 ##
 # topLibs
 ##
 TOP_LIBS = lib parasol/lib submodules/htslib
 ifneq ($(wildcard jkOwnLib/*),)
   TOP_LIBS += jkOwnLib
 endif
 topLibs: topChecks | ${TOP_LIBS:%=%.topLibs}
 %.topLibs:
 	${MAKE} -C $*
 
 topChecks:
 	@./checkUmask.sh
 	@MACHTYPE=${MACHTYPE} ./machTest.sh
-	@./submoduleSetup
+	@./submodules/submoduleSetup
 
 optLib:
 	cd optimalLeaf && ${MAKE}
 
 ##
 # hgLib
 ##
 ifneq ($(wildcard hg/makefile),)
    HGLIB_DIRS += hg/lib
    HGLIB_CHECK = hgLibChecks
 endif
 ifneq ($(wildcard hg/cgilib/makefile),)
    HGLIB_DIRS += hg/cgilib
 endif