7df6e18265341f87a69fba808aa1f92f8ebca841 markd Wed Apr 15 13:39:42 2026 -0700 move copy of htslib diff --git src/htslib/test/fieldarith.sam src/htslib/test/fieldarith.sam deleted file mode 100644 index 180d1e8ff52..00000000000 --- src/htslib/test/fieldarith.sam +++ /dev/null @@ -1,15 +0,0 @@ -@SQ SN:one LN:1000 -@SQ SN:two LN:500 -@CO For each SAM record that has each listed aux field, performs these tests: -@CO XQ is the expected result for bam_cigar2qlen() -@CO XR is the expected result for bam_cigar2rlen() -@CO XE is the expected result for bam_endpos() -@CO (Note that these are all zero-based, while POS is one-based in SAM) -r1 0 one 50 20 8M * 0 0 ATGCATGC qqqqqqqq XQ:i:8 XR:i:8 XE:i:57 -r2 0 one 100 20 50M * 0 0 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT qqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqq XQ:i:50 XR:i:50 XE:i:149 -unmapped 5 two 200 0 * two 200 0 ATGCATGC qqqqqqqq XQ:i:0 XR:i:0 XE:i:200 -hascigar 5 two 200 0 6M2S two 200 0 ATGCATGC qqqqqqqq XQ:i:8 XR:i:6 XE:i:200 -s1 0 one 300 20 2M * 0 0 AT qq XQ:i:2 XR:i:2 XE:i:301 -su1 4 * 0 0 * * 0 0 AT qq XQ:i:0 XR:i:0 XE:i:0 -su2 5 two 400 0 * two 400 0 AT qq XQ:i:0 XR:i:0 XE:i:400 -su3 4 one 500 0 2M * 0 0 AT qq XQ:i:2 XR:i:2 XE:i:500