7df6e18265341f87a69fba808aa1f92f8ebca841 markd Wed Apr 15 13:39:42 2026 -0700 move copy of htslib diff --git src/htslib/test/test-vcf-hdr.out src/htslib/test/test-vcf-hdr.out deleted file mode 100644 index 45588cc23ed..00000000000 --- src/htslib/test/test-vcf-hdr.out +++ /dev/null @@ -1,16 +0,0 @@ -##fileformat=VCFv4.1 -##FILTER=<ID=PASS,Description="All filters passed"> -##fileDate=20150126 -##reference=hs37d5 -##phasing=partial -##FILTER=<ID=INDEL_SPECIFIC_FILTERS,Description="QD < 2.0 || ReadPosRankSum < -20.0 || InbreedingCoeff < -0.8 || FS > 200.0"> -##FILTER=<ID=LowQual,Description="Low quality"> -##FILTER=<ID=VQSRTrancheSNP99.00to99.90,Description="Truth sensitivity tranche level for SNP model at VQS Lod: -6.6778 <= x < -0.6832"> -##FILTER=<ID=VQSRTrancheSNP99.90to100.00+,Description="Truth sensitivity tranche level for SNP model at VQS Lod < -36469.5723"> -##INFO=<ID=TRAILING,Number=.,Type=Integer,Description="This line contains trailing spaces for testing purposes"> -##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> -##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)"> -##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> -##FORMAT=<ID=GATK,Number=1,Type=String,Description="Genotype as called by GATK. Always a diploid call. All other genotype stats based on this genotype."> -##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype after Personalis post-processing to match detected chromosome counts."> -#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001