0a5389e8b81efa99e932f5e9e2424b27ce1af095
max
  Sun May 17 14:53:57 2026 -0700
varFreqs: add GenomeIndia subtrack (9,768 WGS, 83 endogamous Indian populations, Bhattacharyya 2025) and wire into databases.tsv for the next varFreqsAll rebuild. TSV->VCF conversion synthesizes AC=round(AF*AN) with AN=19536 since the upstream release only ships AF, refs #36642

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

diff --git src/hg/makeDb/scripts/varFreqs/databases.tsv src/hg/makeDb/scripts/varFreqs/databases.tsv
index 08b7a8e3a37..4172b715f61 100644
--- src/hg/makeDb/scripts/varFreqs/databases.tsv
+++ src/hg/makeDb/scripts/varFreqs/databases.tsv
@@ -20,15 +20,16 @@
 ALFA	ALFA	/gbdb/hg38/varFreqs/alfa/ALFA.vcf.gz	.	AF_GLB
 MGRB	MGRB Australia	/gbdb/hg38/varFreqs/_mgrb/MGRB.phase3.GRCh38.norm.vcf.gz	AC	.
 HRC	HRC	/gbdb/hg38/varFreqs/hrc/hrc.vcf.gz	AC	AF
 MexBB	Mexico Biobank	/gbdb/hg38/varFreqs/_mxb/mxb.freq.vcf.gz	AC	AF
 SGDP	SGDP	/gbdb/hg38/varFreqs/sgdpFreq/sgdp.freq.vcf.gz	AC	AF
 HGDP1kG	gnomAD HGDP+1kG	/gbdb/hg38/varFreqs/hgdp1kFreq/hgdp1k.freq.vcf.gz	AC	AF
 GREGoR	GREGoR	/gbdb/hg38/varFreqs/gregor/gregor.vcf.gz	AC	AF
 SCHEMA	SCHEMA	/gbdb/hg38/varFreqs/schema/SCHEMA_variant_results_withAF.vcf.gz	AC	AF
 GA4K	GA4K PacBio LR	/gbdb/hg38/varFreqs/ga4k/ga4kSnv.vcf.gz	AC	AF
 CoLoRSdb	CoLoRSdb PacBio LR	/gbdb/hg38/varFreqs/colorsDb/colorsDbSnv.vcf.gz	AC	AF
 SVatalog	SVatalog 101 10XG SR	/gbdb/hg38/varFreqs/svatalog/svatalog.vcf.gz	AC	AF
 Tishkoff180	Tishkoff 180 African WGS	/gbdb/hg38/varFreqs/_tishkoff/tishkoff180.vcf.gz	AC	AF
 WBBC	WBBC China	/gbdb/hg38/varFreqs/wbbc/wbbc.vcf.gz	AC	AF
 TPMI	TPMI Taiwan	/gbdb/hg38/varFreqs/_tpmi/tpmi.vcf.gz	AC	AF
 ChinaMAP	China ChinaMAP	/gbdb/hg38/varFreqs/_chinamap/chinamap.vcf.gz	AC	AF
+GenomeIndia	GenomeIndia 9.7k WGS	/gbdb/hg38/varFreqs/_genomeindia/genomeindia.vcf.gz	AC	AF