0c1e751423b38dd741875d4cdcc6ffb5d4c4a135
max
  Tue May 12 07:51:34 2026 -0700
mei: add DeepMEI 1000G subtrack on hg38

91,617 MEIs (68,282 Alu, 16,891 L1, 6,444 SVA) called by DeepMEI
on the 3,202 high-coverage 1000 Genomes samples. Same 1-bp anchor
convention and Okabe-Ito colors as meiHgsvc3. DeepMEI's symbolic
ALT carries no inserted sequence or insertion length, so the
bigBed schema is a subset of meiHgsvc3 (no svLen, callerCount,
validation flags, insertSeq). Also fixes the INS-svLen:carrierCount
label format note in meiHgsvc3.html. refs #37524

diff --git src/hg/makeDb/trackDb/human/meiHgsvc3.html src/hg/makeDb/trackDb/human/meiHgsvc3.html
index 4be1fd837ac..36341cbb9db 100644
--- src/hg/makeDb/trackDb/human/meiHgsvc3.html
+++ src/hg/makeDb/trackDb/human/meiHgsvc3.html
@@ -31,31 +31,31 @@
 L1ME-AID and PALMER validation flags, overlap with reference
 segmental duplications and tandem repeats, and the full DNA sequence
 of the inserted mobile element (the ALT allele minus the anchor base).
 </p>
 
 <h2>Display Conventions and Configuration</h2>
 <p>
 An insertion has zero length on the reference: it attaches between two
 adjacent reference bases without replacing any of them. Following the
 VCF convention used by the underlying PAV calls and by the other
 long-read SV tracks, each MEI is drawn as a <b>1-bp block sitting on the
 anchor base</b> &mdash; the reference base immediately to the left of
 the insertion attachment point. The inserted mobile element itself is
 not present in the reference and is therefore not drawn; its length is
 reported on the detail page (svLen) and in the item label
-(<tt>INS-svLen-carrierCount</tt>). bigBed does support truly zero-width
+(<tt>INS-svLen:carrierCount</tt>). bigBed does support truly zero-width
 features between nucleotides, but for consistency with the
 <a href="hgTrackUi?g=lrSv">long-read SV tracks</a>, this track uses the
 1-bp anchor representation instead.
 </p>
 <p>
 Items are colored by element class:
 </p>
 <ul>
   <li><span style="display:inline-block;background-color:#0072B2;width:18px;height:12px;vertical-align:middle;"></span> <b>Alu</b> &mdash; SINE (Short INterspersed Element)</li>
   <li><span style="display:inline-block;background-color:#D55E00;width:18px;height:12px;vertical-align:middle;"></span> <b>L1</b> &mdash; LINE-1 (Long INterspersed Element-1)</li>
   <li><span style="display:inline-block;background-color:#009E73;width:18px;height:12px;vertical-align:middle;"></span> <b>SVA</b> (SINE-VNTR-Alu) &mdash; composite retrotransposon</li>
   <li><span style="display:inline-block;background-color:#CC79A7;width:18px;height:12px;vertical-align:middle;"></span> <b>HERVK</b> (Human Endogenous Retrovirus K) &mdash; endogenous retrovirus</li>
   <li><span style="display:inline-block;background-color:#000000;width:18px;height:12px;vertical-align:middle;"></span> <b>snRNA</b> &mdash; small nuclear RNA</li>
 </ul>
 <p>